Full-text articles & supplements 
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[DIR] supplementary/                               -   Supplementary materials for articles, containing mostly SOURCE CODE for executable MODELS
[   ] Alster-2014-PostepyBiochem.pdf             499K  Znaczniki starzenia komórkowego [Markers of cellular senescence]
[   ] Kloskowski-2014-PLOSOne.pdf                 24M  Ureter regeneration—the proper scaffold has to be defined
[   ] Jaruszewicz-2013-JTheorBiol-MS.pdf         1.8M  Type of noise defines global attractors in bistable molecular regulatory systems
[   ] Jaruszewicz-2013-PhysBiol-MS.pdf           1.0M  Toggle switch: noise determines the winning gene
[   ] Stasiek-2014-JCrystallizProcessTechnol.pdf 2.7M  The use of liquid crystal thermography in selected technical and medical applications—Recent development
[   ] Kocieniewski-2012-JTheorBiol-MS.pdf        1.1M  The interplay of double phosphorylation and scaffolding in MAPK pathways
[   ] Kochanczyk-2013-JRSocInterface.pdf         2.9M  Stochastic transitions in a bistable reaction system on the membrane
[   ] Lipniacki-2006-BiophysJ.pdf                797K  Stochastic regulation in early immune response
[   ] Lipniacki-2008-JTheorBiol-MS.pdf           775K  Stochastic effects and bistability in T cell receptor signaling
[   ] Jetka-2014-Bioinformatics-MS.pdf           376K  StochDecomp—Matlab package for noise decomposition in stochastic biochemical systems
[   ] Jaruszewicz-2014-PhysRevE-MS.pdf           1.0M  Stability of bacterial toggle switches is enhanced by cell cycle lengthening by several orders of magnitude
[   ] Pekalski-2013-PLOSOne.pdf                  2.8M  Spontaneous NF-κB activation by autocrine TNFα signaling: A computational analysis
[   ] Kazmierczak-2010-IETSystBiol-MS.pdf        1.0M  Spatial gradients in kinase cascade regulation
[   ] Tay-2010-Nature.pdf                        883K  Single-cell NF-κB dynamics reveal digital activation and analogue information processing
[   ] Lipniacki-2007-BMCBioinformatics.pdf       1.8M  Single TNFα trimers mediating NF-κB activation: Stochastic robustness of NF-κB signaling
[   ] Aliper-2015-Aging-MS.pdf                   3.7M  Signaling pathway activation drift during aging: Hutchinson-Gilford Progeria Syndrome fibroblasts are comparable to normal middle-age and old-age cells
[   ] Zuk-2018-PhysRevE-MS.pdf                   1.1M  Sampling rare events in stochastic reaction-diffusion systems within trajectory looping
[   ] Korwek-2014-PostepyBiochem.pdf             1.3M  Rola szlaku indukowanego uszkodzeniami DNA w apoptozie i starzeniu komórkowym [The role of the DNA damage response in apoptosis and cell senescence]
[   ] Billing-2019-CommunBiol.pdf                1.1M  Robustness and information transfer within IL-6-induced JAK/STAT signalling
[   ] Kochanczyk-2017-SciRep.pdf                 3.1M  Relaxation oscillations and hierarchy of feedbacks in MAPK signaling
[   ] Piechor-2012-ArchMech.pdf                  295K  Reaction-diffusion equation modelling calcium waves with fast buffering in visco-elastic environment
[   ] Finkelstaedt-2013-AnnApplStat-MS.pdf       1.3M  Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: An application to single cell data
[   ] Kochanczyk-2011-BMCStructBiol.pdf          1.7M  Prediction of functionally important residues in globular proteins from unusual central distances of amino acids
[   ] Blonski-2007-JTheorApplMech.pdf            487K  PIV analysis of turbulent flow in a micro-channel
[   ] Chaturvedi-2005-JRSocInterface.pdf         1.3M  On multiscale approaches to three-dimensional modelling of morphogenesis
[   ] Rafalowska-2014-FoliaNeuropathol.pdf       680K  Non-woven nanofiber mats – a new perspective for experimental studies of the central nervous system?
[   ] Piechor-2008-ArchMech.pdf                  289K  Non-local Korteweg stresses from kinetic theory point of view
[   ] Schumacher-2013-mBio.pdf                   519K  Nitrogen and carbon status are integrated at the transcriptional level by the nitrogen regulator NtrC in vivo
[   ] Adamowicz-2016-PLOSOne.pdf                 4.9M  New amniotic membrane based biocomposite for future application in reconstructive urology
[   ] Blim-2014-BullPolAcadSciTechSci.pdf        1.5M  Modeling of pneumatic melt drawing of polypropylene super-thin fibers in the Laval nozzle
[   ] Wegrzyn-2013-MicrofluidNanofluid.pdf       745K  Microfluidic architectures for efficient generation of chemistry gradations in droplets
[   ] Kazmierczak-2010-ArchMech.pdf              727K  Mechanical effects coupled with calcium waves
[   ] Liepe-2013-PLOSComputBiol.pdf              1.6M  Maximizing the information content of experiments in systems biology 
[   ] Kocieniewski-2013-PhysBiol-MS.pdf          2.6M  MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response
[   ] Bogdal-2013-BMCSystBiol.pdf                3.1M  Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate
[   ] Pokrywczynska-2014-PLOSOne.pdf             6.5M  Is the poly(L-lactide-co-caprolactone) nanofibrous membrane suitable for urinary bladder regeneration?
[   ] Paprocki-2013-BMCNeuroscience-ABS.pdf      182K  Information transmission efficiency in neuronal communication systems
[   ] Tudelska-2017-SciRep.pdf                   5.1M  Information processing in the NF-κB pathway
[   ] Korwek-2016-BiolDirect.pdf                 2.0M  Importins promote high-frequency NF-κB oscillations increasing information channel capacity
[   ] Blonski-2011-ArchMech.pdf                  2.4M  Hydro-dynamically modified seeding for micro-PIV
[   ] Chylek-2011-MolBiosyst-MS.pdf              1.2M  Guidelines for visualizing and annotating rule-based models
[   ] Hat-2016-PLOSComputBiol.pdf                3.4M  Feedbacks, bifurcations, and cell fate decision-making in the p53 system
[   ] Hat-2009-IETSystBiol-MS.pdf                1.3M  Exploring mechanisms of oscillations in p53 and NF-κB systems
[   ] Kowalewski-2005-BPolAcadSciTech.pdf        516K  Experiments and modelling of electrospinning process
[   ] Sulejczak-2014-FoliaNeuropathol.pdf        1.0M  Electrospun nanofiber mat as a protector against the consequences of brain injury
[   ] Szymanska-2015-PhysRevE-MS.pdf             2.6M  Effective reaction rates in diffusion-limited phosphorylation–dephosphorylation cycles
[   ] Nalecz-Jawecki-2015-JChemPhys-MS.pdf       511K  Effective reaction rates for diffusion-limited reaction cycles
[   ] Pierini-2019-ACSOmega.pdf                  4.6M  Effect of electron–acceptor content on the efficiency of regioregular double-cable thiophene copolymers in single-material organic solar cells
[   ] Lipniacki-1997-ArchMech.pdf                3.9M  Dynamics of turbulent helium II, limits of the Vinen model
[   ] Zuk-2012-PhysBiol-MS.pdf                   1.4M  Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors...
[   ] Blim-2012-ePolymers.pdf                    137K  Dynamic lattice liquid (DLL) model in computer simulation of the structure and dynamics of polymer condensed systems
[   ] Bertolusso-2014-PLOSOne.pdf                6.9M  Dynamic cross talk model of the epithelial innate immune response to double-stranded RNA stimulation: Coordinated dynamics emerging from cell-level noise
[   ] Kellog-2015-eLife.pdf                      4.9M  Digital signaling decouples activation probability and population heterogeneity
[   ] Peradzynski-2010-ArchMech.pdf              247K  Diffusion of calcium in biological tissues and accompanying mechano-chemical effects
[   ] Szumbarski-2011-ArchMech.pdf               1.1M  Destabilization of a laminar flow in a rectangular channel by transversely-oriented wall corrugation
[   ] Komorowski-2013-BiophysJ.pdf               1.4M  Decomposing noise in biochemical signaling systems highlights the role of protein degradation
[   ] Puszynski-2009-IETSystBiol-MS.pdf          1.8M  Crosstalk between p53 and NF-κB systems: pro- and anti-apoptotic functions of NF-κB
[   ] Wronowska-2015-BMCSystBiol.pdf             2.1M  Computational modeling of sphingolipid metabolism
[   ] Szymanska-2015-PLOSOne.pdf                 1.3M  Computational analysis of an autophagy/translation switch based on mutual inhibition of mTORC1 and ULK1
[   ] Habibi-2017-PLOSComputBiol.pdf             2.2M  Computation and measurement of cell decision making errors using single cell data
[   ] Nienaltowski-2015-BMCSystBiol.pdf          678K  Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics
[   ] Czerkies-2018-NatCommun.pdf                2.0M  Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways
[   ] Kursa-2011-PhysRevB-MS.pdf                 1.4M  Cascade of vortex loops initiated by a single reconnection of quantum vortices
[   ] Hat-2011-PLoSComputBiol.pdf                1.4M  B cell activation triggered by the formation of the small receptor cluster: A computational study
[   ] Jetka-2018-NatCommun.pdf                   895K  An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling
[   ] Bobrowski-2017-MathModelMethApplSci-MS.pdf 935K  An averaging principle for fast diffusions in domains separated by semi-permeable membranes
[   ] Korczyk-2019-NatCommun.pdf                 1.8M  Accounting for corner flow unifies the understanding of droplet formation in microfluidic channels
[   ] Cheng-2014-PLOSOne-MS.pdf                  804K  A mathematical model of bimodal epigenetic control of miR-193a in ovarian cancer stem cells
[   ] Woodcock-2013-Bioinformatics.pdf           580K  A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number
[   ] Barua-2012-JImmunol-MS.pdf                 1.7M  A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn
[   ] Sankaran_2020_PhysFluids.pdf               4.8M  
[   ] Rinoldi-2021-Biomacromolecules.pdf         7.8M  
[   ] Kochanczyk-2021-SciRep.pdf                 3.8M  
[   ] Kochanczyk-2021-RSocOpenSci.pdf            1.9M  
[   ] Kochanczyk-2020-MathModelNatPhenom.pdf     964K
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