Joanna Jaruszewicz-Błońska: Difference between revisions
From Laboratory of Modeling in Biology and Medicine
mNo edit summary |
mNo edit summary |
||
| (11 intermediate revisions by the same user not shown) | |||
| Line 14: | Line 14: | ||
===Publications=== | ===Publications=== | ||
* <span class="pmbm">Korwek Z<sup>☯</sup></span>, <span class="pmbm">Czerkies M<sup>☯</sup></span>, <span class="pmbm">Jaruszewicz-Błońska J<sup>☯</sup></span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kosiuk I</span>, <span class="pmbm">Kochańczyk M<sup>☯</sup></span>, <span class="pmbm">Lipniacki T</span>. '''Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response''', ''Sci Signal'' <u>16</u>(815):eabq1173 (2023) [https://pubmed.ncbi.nlm.nih.gov/38085817 PubMed] [https://doi.org/10.1126/scisignal.abq1173 CrossRef] | [{{SERVER}}/publications/Korwek-2023-SciSignal.pdf FullText] [https://doi.org/10.1101/2022.01.30.478391 bioRxiv] | |||
* <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Kosiuk I</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Lipniacki T</span>. '''A plausible identifiable model of the canonical NF-κB signaling pathway''', ''PLOS One'' <u>8</u>(6):e0286416 (2023) [https://pubmed.ncbi.nlm.nih.gov/37267242 PubMed] [https://doi.org/10.1371/journal.pone.0286416 CrossRef] [https://doi.org/10.1101/2022.06.09.495460 bioRxiv] | |||
* <span class="pmbm">Hat B</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Lipniacki T</span>. '''Model-based optimization of combination protocols for irradiation-insensitive cancers''', ''Sci Rep'' <u>10</u>:12652 (2020) [https://doi.org/10.1038/s41598-020-69380-6 CrossRef] | [https://www.nature.com/articles/s41598-020-69380-6.pdf PDF] | |||
* <span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>. '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways''', ''Nat Commun'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode] | * <span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>. '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways''', ''Nat Commun'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode] | ||
| Line 19: | Line 25: | ||
* <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Lipniacki T</span>. '''Genetic toggle switch controlled by bacterial growth rate''', ''BMC Systems Biology'' <u>11</u>:117 (2017) [http://doi.org/10.1186/s12918-017-0483-4 CrossRef] | * <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Lipniacki T</span>. '''Genetic toggle switch controlled by bacterial growth rate''', ''BMC Systems Biology'' <u>11</u>:117 (2017) [http://doi.org/10.1186/s12918-017-0483-4 CrossRef] | ||
* <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u> | * <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u>7</u>:38244 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28045041 PubMed] [http://dx.doi.org/10.1038/srep38244 CrossRef] | [http://www.nature.com/articles/srep38244.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgen-UPDATED.zip SuppCode-BNG] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeMatlabMatcont.zip SuppCode-MatCont] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgenNoisyEGFR.zip SuppCode-BNG-noisy] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeComsol.zip SuppCode-Comsol] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-Movie.mp4 SuppMovie] | ||
* <span class="pmbm">Jaruszewicz J</span>, <span class="nopmbm">Kimmel M</span>, <span class="pmbm">Lipniacki T</span>. '''Stability of bacterial toggle switches is enhanced by cell-cycle lengthening by several orders of magnitude''', ''Phys Rev E'' <u>89</u>(2):022710 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25353512 PubMed] [http://dx.doi.org/10.1103/PhysRevE.89.022710 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Jaruszewicz-2014-PhysRevE-MS.pdf PDF-ms] | * <span class="pmbm">Jaruszewicz J</span>, <span class="nopmbm">Kimmel M</span>, <span class="pmbm">Lipniacki T</span>. '''Stability of bacterial toggle switches is enhanced by cell-cycle lengthening by several orders of magnitude''', ''Phys Rev E'' <u>89</u>(2):022710 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25353512 PubMed] [http://dx.doi.org/10.1103/PhysRevE.89.022710 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Jaruszewicz-2014-PhysRevE-MS.pdf PDF-ms] | ||
| Line 33: | Line 39: | ||
===Theses=== | ===Theses=== | ||
* Ph.D. Thesis: [http://pmbm.ippt.gov.pl/theses/Jaruszewicz-2014-PhDThesis.pdf PDF] (defended with distinction) | * Ph.D. Thesis (2014): [http://pmbm.ippt.gov.pl/theses/Jaruszewicz-2014-PhDThesis.pdf PDF] (defended with distinction) | ||
Latest revision as of 11:09, 19 December 2023
Ph.D., Assistant Professor
Contact
e-mail at ippt.pan.pl: jjarusz
tel.: +48 22 8261280 ext. 411
room: 326
Institute of Fundamental Technological Research
Polish Academy of Sciences
Pawińskiego 5B, 02-106 Warsaw, Poland
Publications
- Korwek Z☯, Czerkies M☯, Jaruszewicz-Błońska J☯, Prus W, Kosiuk I, Kochańczyk M☯, Lipniacki T. Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response, Sci Signal 16(815):eabq1173 (2023) PubMed CrossRef | FullText bioRxiv
- Jaruszewicz-Błońska J, Kosiuk I, Prus W, Lipniacki T. A plausible identifiable model of the canonical NF-κB signaling pathway, PLOS One 8(6):e0286416 (2023) PubMed CrossRef bioRxiv
- Hat B, Jaruszewicz-Błońska J, Lipniacki T. Model-based optimization of combination protocols for irradiation-insensitive cancers, Sci Rep 10:12652 (2020) CrossRef | PDF
- Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T. Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways, Nat Commun 9:493 (2018) PubMed CrossRef | PDF SuppInfo-PDF SuppData SuppMovies SuppCode
- Jaruszewicz-Błońska J, Lipniacki T. Genetic toggle switch controlled by bacterial growth rate, BMC Systems Biology 11:117 (2017) CrossRef
- Kochańczyk M, Kocieniewski P, Kozłowska E, Jaruszewicz-Błońska J, Sparta B, Pargett M, Albeck JG, Hlavacek WS, Lipniacki T. Relaxation oscillations and hierarchy of feedbacks in MAPK signaling, Sci Rep 7:38244 (2017) PubMed CrossRef | PDF SuppInfo-PDF SuppCode-BNG SuppCode-MatCont SuppCode-BNG-noisy SuppCode-Comsol SuppMovie
- Jaruszewicz J, Kimmel M, Lipniacki T. Stability of bacterial toggle switches is enhanced by cell-cycle lengthening by several orders of magnitude, Phys Rev E 89(2):022710 (2014) PubMed CrossRef | PDF-ms
- Kochańczyk M, Jaruszewicz J, Lipniacki T. Stochastic transitions in a bistable reaction system on the membrane, J R Soc Interface 10(84):20130151 (2013) PubMed CrossRef | PDF Supp-PDF Supp-movies
- Jaruszewicz J, Lipniacki T. Toggle switch: Noise determines the winning gene, Phys Biol 10(3):035007 (2013) PubMed CrossRef | PDF-ms
- Jaruszewicz J, Zuk PJ, Lipniacki T. Type of noise defines global attractors in bistable molecular regulatory systems, J Theor Biol 317:140-151 (2013; online 2012) PubMed CrossRef | PDF-ms
- Zuk PJ, Kochańczyk M, Jaruszewicz J, Bednorz W, Lipniacki T. Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process, Phys Biol 5(9):055002 (2012) PubMed CrossRef | PDF-ms
Theses
- Ph.D. Thesis (2014): PDF (defended with distinction)
