Maciej Czerkies: Difference between revisions
From Laboratory of Modeling in Biology and Medicine
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===Publications=== | ===Publications=== | ||
* <span class=" | * <span class="nopmbm">Dudek I</span>, <span class="pmbm">Czekies M</span>, <span class="nopmbm">Kwiatek A</span>. '''IL-6, TNF-α genes, and long non-coding RNAs are targets for non-structural proteins NS1 and NS2 of Human Respiratory Syncytial Virus''' (submitted) [https://www.researchsquare.com/article/rs-2280280/v1 RS] | ||
* <span class="pmbm">Tudelska K</span>, <span class="pmbm">Markiewicz J</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Czerkies M</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Korwek Z</span>, <span class="nopmbm">Abdi A</span>, <span class="pmbm">Błoński S</span>, <span class="pmbm">Kaźmierczak B</span>, <span class="pmbm">Lipniacki T</span>. '''Information processing in the NF-κB pathway''', '' | * <span class="pmbm">Korwek Z<sup>☯</sup></span>, <span class="pmbm">Czerkies M<sup>☯</sup></span>, <span class="pmbm">Jaruszewicz-Błońska J<sup>☯</sup></span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kosiuk I</span>, <span class="pmbm">Kochańczyk M<sup>☯</sup></span>, <span class="pmbm">Lipniacki T</span>. '''Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response''', ''Sci Signal'' <u>16</u>(815):eabq1173 (2023) [https://pubmed.ncbi.nlm.nih.gov/38085817 PubMed][https://doi.org/10.1126/scisignal.abq1173 CrossRef] | [{{SERVER}}/publications/Korwek-2023-SciSignal.pdf FullText] [https://doi.org/10.1101/2022.01.30.478391 bioRxiv] | ||
* <span class="nopmbm">Sønstevold L<sup>☯</sup></span>, <span class="pmbm">Czerkies M<sup>☯</sup></span>, <span class="nopmbm">Escobedo-Cousin E</span>, <span class="pmbm">Blonski S</span>, <span class="nopmbm">Vereshchagina E</span>. '''Application of polymethylpentene, an oxygen permeable thermoplastic, for long-term on-a-chip cell culture and organ-on-a-chip devices''', ''Micromachines'' <u>14</u>(3):532 (2023) [https://dx.doi.org/10.3390/mi14030532 CrossRef] | |||
* <span class="pmbm">Grabowski F</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Czerkies M</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Lipniacki T</span>. '''Antagonism between viral infection and innate immunity at the single-cell level''', ''PLOS Pathog'' <u>19</u>(9):e1011597 (2023) [https://pubmed.ncbi.nlm.nih.gov/37669278 PubMed] [https://doi.org/10.1371/journal.ppat.1011597 CrossRef] | [https://doi.org/10.1101/2022.11.18.517110 bioRxiv] [https://github.com/grfrederic/visavis Code] [https://doi.org/10.5281/zenodo.7428925 Data] | |||
* <span class="author">Czerkies M<sup>☯</sup></span>, <span class="author">Kochańczyk M<sup>☯</sup></span>, <span class="author">Korwek Z</span>, <span class="author">Prus W</span>, <span class="author">Lipniacki T</span>. '''Respiratory syncytial virus protects bystander cells against influenza A virus infection by triggering secretion of type I and type III interferons''', ''J Virol'' <u>96</u>:22 e01341-22 (2022) [https://pubmed.ncbi.nlm.nih.gov/36326278 PubMed] [https://doi.org/10.1128/jvi.01341-22 CrossRef] | [https://doi.org/10.1101/2021.10.11.463877 bioRxiv] | |||
* <span class="nopmbm">Białobrzeska W</span>, <span class="nopmbm">Firganek D</span>, <span class="pmbm">Czerkies M</span>, <span class="pmbm">Lipniacki T</span>, <span class="nopmbm">Skwarecka M</span>, <span class="nopmbm">Dziąbowska K</span>, <span class="nopmbm">Cebula Z</span>, <span class="nopmbm">Malinowska N</span>, <span class="nopmbm">Bigus D</span>, <span class="nopmbm">Bięga E</span>, <span class="nopmbm">Pyrć K</span>, <span class="nopmbm">Pala K</span>, <span class="nopmbm">Żołędowska S</span>, <span class="nopmbm">Nidzworski D</span>. '''Electrochemical immunosensors based on screen-printed gold and glassy carbon electrodes: Comparison of performance for respiratory syncytial virus detection''', ''Biosensors'' <u>10</u>(11):175 (2020) [https://doi.org/10.3390/bios10110175 CrossRef] | |||
* <span class="pmbm">Czerkies M<sup>☯</sup></span>, <span class="pmbm">Korwek Z<sup>☯</sup></span>, <span class="pmbm">Prus W<sup>☯</sup></span>, <span class="pmbm">Kochańczyk M<sup>☯</sup></span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>. '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways''', ''Nat Commun'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode] | |||
* <span class="pmbm">Tudelska K</span>, <span class="pmbm">Markiewicz J</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Czerkies M</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Korwek Z</span>, <span class="nopmbm">Abdi A</span>, <span class="pmbm">Błoński S</span>, <span class="pmbm">Kaźmierczak B</span>, <span class="pmbm">Lipniacki T</span>. '''Information processing in the NF-κB pathway''', ''Sci Rep'' <u>7</u>:15926 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/29162874 PubMed] [http://doi.org/10.1038/s41598-017-16166-y CrossRef] | [http://www.nature.com/articles/s41598-017-16166-y.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppDataset1.zip SuppCode-BNGL] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppDataset2.zip SuppCode-Py] | |||
* <span class="nopmbm">Urbanek O</span>, <span class="nopmbm">Sajkiewicz P</span>, <span class="pmbm">Pierini F</span>, <span class="pmbm">Czerkies M</span>, <span class="nopmbm">Kołbuk D</span>. '''Structure and properties of polycaprolactone/chitosan nonwovens tailored by solvent systems''', ''Biomed Mater'' <u>12</u>:015020 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28157717 PubMed] [http://dx.doi.org/10.1088/1748-605X/aa5647 CrossRef] | * <span class="nopmbm">Urbanek O</span>, <span class="nopmbm">Sajkiewicz P</span>, <span class="pmbm">Pierini F</span>, <span class="pmbm">Czerkies M</span>, <span class="nopmbm">Kołbuk D</span>. '''Structure and properties of polycaprolactone/chitosan nonwovens tailored by solvent systems''', ''Biomed Mater'' <u>12</u>:015020 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28157717 PubMed] [http://dx.doi.org/10.1088/1748-605X/aa5647 CrossRef] | ||
* <span class="pmbm">Korwek Z<sup> | * <span class="pmbm">Korwek Z<sup>☯</sup></span>, <span class="pmbm">Tudelska K<sup>☯</sup></span>, <span class="nopmbm">Nałęcz-Jawecki P<sup>☯</sup></span>, <span class="pmbm">Czerkies M<sup>☯</sup></span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Markiewicz J</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Lipniacki T</span>. '''Importins promote high-frequency NF-κB oscillations increasing information channel capacity''', ''Biol Direct'' <u>11</u>:61 (2016) [http://www.ncbi.nlm.nih.gov/pubmed/27835978 PubMed] [http://dx.doi.org/10.1186/s13062-016-0164-z CrossRef] | [http://pmbm.ippt.pan.pl/publications/Korwek-2016-BiolDirect.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Korwek-2016-BiolDirect-Fig1d-HiRes.pdf Scheme-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Korwek-2016-BiolDirect-AddFile1-ModelDescription.pdf SuppModelInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Korwek-2016-BiolDirect-AddFile2-NFkBImportinsModel.bngl SuppModelCode-BNGL] [http://pmbm.ippt.pan.pl/publications/supplementary/Korwek-2016-BiolDirect-AddFile3-SuppFigs-S1-to-S7.pdf SuppFigs-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Korwek-2016-BiolDirect-AddFiles4567-SuppImages.zip SuppImages-ZIP] | ||
* <span class="nopmbm">Czerkies M</span>, <span class="nopmbm">Borzęcka K</span>, <span class="nopmbm">Zdioruk MI</span>, <span class="nopmbm">Płóciennikowska A</span>, <span class="nopmbm">Sobota A</span>, <span class="nopmbm">Kwiatkowska K</span>. '''An interplay between scavenger receptor A and CD14 during activation of J774 cells by high concentrations of LPS''', ''Immunobiology'' <u>218</u>(10):1217–26 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23669238 PubMed] [http://dx.doi.org/10.1016/j.imbio.2013.04.005 CrossRef] | * <span class="nopmbm">Czerkies M</span>, <span class="nopmbm">Borzęcka K</span>, <span class="nopmbm">Zdioruk MI</span>, <span class="nopmbm">Płóciennikowska A</span>, <span class="nopmbm">Sobota A</span>, <span class="nopmbm">Kwiatkowska K</span>. '''An interplay between scavenger receptor A and CD14 during activation of J774 cells by high concentrations of LPS''', ''Immunobiology'' <u>218</u>(10):1217–26 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23669238 PubMed] [http://dx.doi.org/10.1016/j.imbio.2013.04.005 CrossRef] | ||
Latest revision as of 12:09, 19 December 2023
Ph.D., Assistant Professor
Contact
e-mail at ippt.pan.pl: mczerkie
tel.: +48 22 8261280 ext. 326
room: 221
Institute of Fundamental Technological Research
Polish Academy of Sciences
Pawińskiego 5B, 02-106 Warsaw, Poland
Publications
- Dudek I, Czekies M, Kwiatek A. IL-6, TNF-α genes, and long non-coding RNAs are targets for non-structural proteins NS1 and NS2 of Human Respiratory Syncytial Virus (submitted) RS
- Korwek Z☯, Czerkies M☯, Jaruszewicz-Błońska J☯, Prus W, Kosiuk I, Kochańczyk M☯, Lipniacki T. Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response, Sci Signal 16(815):eabq1173 (2023) PubMedCrossRef | FullText bioRxiv
- Sønstevold L☯, Czerkies M☯, Escobedo-Cousin E, Blonski S, Vereshchagina E. Application of polymethylpentene, an oxygen permeable thermoplastic, for long-term on-a-chip cell culture and organ-on-a-chip devices, Micromachines 14(3):532 (2023) CrossRef
- Grabowski F, Kochańczyk M, Korwek Z, Czerkies M, Prus W, Lipniacki T. Antagonism between viral infection and innate immunity at the single-cell level, PLOS Pathog 19(9):e1011597 (2023) PubMed CrossRef | bioRxiv Code Data
- , , , , . Respiratory syncytial virus protects bystander cells against influenza A virus infection by triggering secretion of type I and type III interferons, J Virol 96:22 e01341-22 (2022) PubMed CrossRef | bioRxiv
- Białobrzeska W, Firganek D, Czerkies M, Lipniacki T, Skwarecka M, Dziąbowska K, Cebula Z, Malinowska N, Bigus D, Bięga E, Pyrć K, Pala K, Żołędowska S, Nidzworski D. Electrochemical immunosensors based on screen-printed gold and glassy carbon electrodes: Comparison of performance for respiratory syncytial virus detection, Biosensors 10(11):175 (2020) CrossRef
- Czerkies M☯, Korwek Z☯, Prus W☯, Kochańczyk M☯, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T. Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways, Nat Commun 9:493 (2018) PubMed CrossRef | PDF SuppInfo-PDF SuppData SuppMovies SuppCode
- Tudelska K, Markiewicz J, Kochańczyk M, Czerkies M, Prus W, Korwek Z, Abdi A, Błoński S, Kaźmierczak B, Lipniacki T. Information processing in the NF-κB pathway, Sci Rep 7:15926 (2017) PubMed CrossRef | PDF SuppInfo-PDF SuppCode-BNGL SuppCode-Py
- Urbanek O, Sajkiewicz P, Pierini F, Czerkies M, Kołbuk D. Structure and properties of polycaprolactone/chitosan nonwovens tailored by solvent systems, Biomed Mater 12:015020 (2017) PubMed CrossRef
- Korwek Z☯, Tudelska K☯, Nałęcz-Jawecki P☯, Czerkies M☯, Prus W, Markiewicz J, Kochańczyk M, Lipniacki T. Importins promote high-frequency NF-κB oscillations increasing information channel capacity, Biol Direct 11:61 (2016) PubMed CrossRef | PDF Scheme-PDF SuppModelInfo-PDF SuppModelCode-BNGL SuppFigs-PDF SuppImages-ZIP
- Czerkies M, Borzęcka K, Zdioruk MI, Płóciennikowska A, Sobota A, Kwiatkowska K. An interplay between scavenger receptor A and CD14 during activation of J774 cells by high concentrations of LPS, Immunobiology 218(10):1217–26 (2013) PubMed CrossRef
- Kleveta G, Borzęcka K, Zdioruk M, Czerkies M, Kuberczyk H, Sybirna N, Sobota A, Kwiatkowska K. LPS induces phosphorylation of actin-regulatory proteins leading to actin reassembly and macrophage motility, J Cell Biochem 113(1):80–92 (2012) PubMed CrossRef
- Józefowski S, Czerkies M, Sobota A, Kwiatkowska K. Determination of cell surface expression of Toll-like receptor 4 by cellular enzyme-linked immunosorbent assay and radiolabeling, Anal Biochem 413(2):185–191 (2011) PubMed CrossRef
- Józefowski S, Czerkies M, Łukasik A, Bielawska A, Bielawski J, Kwiatkowska K, Sobota A. Ceramide and Ceramide 1-Phosphate Are Negative Regulators of TNF-α Production Induced by Lipopolysaccharide, J Immunol 185(11):6960–6973 (2010) PubMed CrossRef
- Czerkies M, Raczkowska A, Brzostek K. Quo vadis Yersinia pestis? Ewolucja patogennych gatunków z rodzaju Yersinia [Quo vadis Yersinia pestis? The evolution of pathogenic species of the genus Yersinia], Postep Mikrobiol 48(3):181–196 (2009) PDF
