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* <span class="nopmbm">Varga A</span>, <span class="nopmbm">Ehrenreiter K</span>, <span class="nopmbm">Aschenbrenner B</span>, <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Kochanczyk M</span>, <span class="pmbm">Lipniacki T</span>, <span class="nopmbm">Baccarini M</span>. '''RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα''', ''Sci Signal'' <u>10</u>(469):eaai8482 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28270557 PubMed] [http://dx.doi.org/10.1126/scisignal.aai8482 CrossRef] | [{{SERVER}}/publications/supplementary/Varga-2017-SciSignal-SuppCode.bngl SuppCode-BioNetGen] | * <span class="nopmbm">Varga A</span>, <span class="nopmbm">Ehrenreiter K</span>, <span class="nopmbm">Aschenbrenner B</span>, <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Kochanczyk M</span>, <span class="pmbm">Lipniacki T</span>, <span class="nopmbm">Baccarini M</span>. '''RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα''', ''Sci Signal'' <u>10</u>(469):eaai8482 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28270557 PubMed] [http://dx.doi.org/10.1126/scisignal.aai8482 CrossRef] | [{{SERVER}}/publications/supplementary/Varga-2017-SciSignal-SuppCode.bngl SuppCode-BioNetGen] | ||
* <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u>6</u>:38244 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28045041 PubMed] [http://dx.doi.org/10.1038/srep38244 CrossRef] | [http://www.nature.com/articles/srep38244.pdf PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgen.zip SuppCode-BNG] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeMatlabMatcont.zip SuppCode-MatCont] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgenNoisyEGFR.zip SuppCode-BNG-noisy] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeComsol.zip SuppCode-Comsol] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-Movie.mp4 SuppMovie] | * <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u>6</u>:38244 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28045041 PubMed] [http://dx.doi.org/10.1038/srep38244 CrossRef] | [http://www.nature.com/articles/srep38244.pdf PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgen-UPDATED.zip SuppCode-BNG] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeMatlabMatcont.zip SuppCode-MatCont] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgenNoisyEGFR.zip SuppCode-BNG-noisy] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeComsol.zip SuppCode-Comsol] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-Movie.mp4 SuppMovie] | ||
* <span class="nopmbm">Adimy M</span>, <span class="nopmbm">Chekroun A</span>, <span class="pmbm">Kaźmierczak B</span>. '''Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis''', ''J Differ Equ'' <u>262</u>(7):4085–4128 (2017) [http://dx.doi.org/10.1016/j.jde.2016.12.009 CrossRef] | * <span class="nopmbm">Adimy M</span>, <span class="nopmbm">Chekroun A</span>, <span class="pmbm">Kaźmierczak B</span>. '''Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis''', ''J Differ Equ'' <u>262</u>(7):4085–4128 (2017) [http://dx.doi.org/10.1016/j.jde.2016.12.009 CrossRef] | ||
Revision as of 10:30, 30 August 2017
Laboratory of Modeling in Biology and Medicine
biophysics | systems biology | bioengineering
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Head: |
Recent publications of our Lab:
- Kochańczyk M, Hlavacek WS, Lipniacki T. Spatkin: a simulator for rule-based modeling of biomolecular site dynamics on surfaces, Bioinformatics (accepted) CrossRef Www
- Urbanek O, Sajkiewicz P, Pierini F. The effect of polarity in the electrospinning process on PCL/chitosan nanofibres' structure, properties and efficiency of surface modification, Polymer 124:168–75 (2017) CrossRef
- Pierini F, Lanzi M, Nakielski P, Pawłowska S, Urbanek O, Zembrzycki K, Kowalewski TA. Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers, Macromolecules 50(13):4972–81 (2017) CrossRef
- Varga A, Ehrenreiter K, Aschenbrenner B, Kocieniewski P, Kochanczyk M, Lipniacki T, Baccarini M. RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα, Sci Signal 10(469):eaai8482 (2017) PubMed CrossRef | SuppCode-BioNetGen
- Kochańczyk M, Kocieniewski P, Kozłowska E, Jaruszewicz-Błońska J, Sparta B, Pargett M, Albeck JG, Hlavacek WS, Lipniacki T. Relaxation oscillations and hierarchy of feedbacks in MAPK signaling, Sci Rep 6:38244 (2017) PubMed CrossRef | PDF SuppInfo-PDF SuppCode-BNG SuppCode-MatCont SuppCode-BNG-noisy SuppCode-Comsol SuppMovie
- Adimy M, Chekroun A, Kaźmierczak B. Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis, J Differ Equ 262(7):4085–4128 (2017) CrossRef
