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* '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px"> | * '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px"> | ||
* '''Robin-type boundary conditions in transition from reaction-diffusion equations in 3D domains to equations in 2D domains'''<br style="line-height: 50%; margin-bottom:10px"/><span class="nopmbm">Bobrowski A</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Journal of Differential Equations'' (2019) [https://doi.org/10.1016/j.jde.2019.08.022 CrossRef]<br style="line-height: 100%; margin-bottom:16px"> | * '''Robin-type boundary conditions in transition from reaction-diffusion equations in 3D domains to equations in 2D domains'''<br style="line-height: 50%; margin-bottom:10px"/><span class="nopmbm">Bobrowski A</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Journal of Differential Equations'' <u>268</u>(1):239–271 (2019) [https://doi.org/10.1016/j.jde.2019.08.022 CrossRef]<br style="line-height: 100%; margin-bottom:16px"> | ||
* '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px"> | * '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px"> | ||
Revision as of 11:37, 19 October 2019
Laboratory of Modeling in Biology and Medicine
biophysics | systems biology | bioengineering
 |
Head: |
Recent publications of our Lab:
- Accounting for corner flow unifies the understanding of droplet formation
in microfluidic channels
Korczyk PM, van Steijn V, Blonski S, Zaremba D, Beattie DA, Garstecki P.
Nature Communications 10:2528 (2019) CrossRef | PDF SuppInfo-PDF
- The limited information capacity of cross-reactive sensors drives the evolutionary
expansion of signaling
Komorowski M, Tawfik DS.
Cell Systems 8(1):76–85.e6 (2019) PubMed CrossRef
- Robin-type boundary conditions in transition from reaction-diffusion equations in 3D domains to equations in 2D domains
Bobrowski A, Lipniacki T.
Journal of Differential Equations 268(1):239–271 (2019) CrossRef
- Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways
Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T.
Nature Communications 9:493 (2018) PubMed CrossRef | PDF SuppInfo-PDF SuppData SuppMovies SuppCode
- An information-theoretic framework for deciphering pleiotropic and noisy
biochemical signaling
Jetka T, Nienałtowski K, Filippi S, Stumpf MPH, Komorowski M.
Nature Communications 9:4591 (2018) PubMed CrossRef | PDF SuppInfo-PDF
- Information processing in the NF-κB pathway
Tudelska K, Markiewicz J, Kochańczyk M, Czerkies M, Prus W, Korwek Z, Abdi A, Błoński S, Kaźmierczak B, Lipniacki T.
Scientific Reports 7:15926 (2017) PubMed CrossRef | PDF SuppInfo-PDF SuppCode-BNGL SuppCode-Py
- Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers
Pierini F, Lanzi M, Nakielski P, Pawłowska S, Urbanek O, Zembrzycki K, Kowalewski TA.
Macromolecules 50(13):4972–81 (2017) CrossRef
- Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis
Adimy M, Chekroun A, Kaźmierczak B.
Journal of Differential Equations 262(7):4085–4128 (2017) CrossRef
- The propagation phenomenon of solutions of a parabolic problem on the sphere
Kazmierczak B, Tsai J-C, Bialecki S.
Mathematical Models and Methods in Applied Sciences 28(10):2001–2067 (2018) CrossRef
To learn more on our research, you may read our perspective on regulatory pathway modeling (a book chapter in Polish).
