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* '''Robin-type boundary conditions in transition from reaction-diffusion equations in&nbsp;3D&nbsp;domains to equations in 2D domains'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Lipniacki&nbsp;T</span>, <span class="nopmbm">Bobrowski&nbsp;A</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Journal of Differential Equations'' (in press) [https://doi.org/10.1016/j.jde.2019.08.022 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
* '''Accounting for corner flow unifies the understanding of droplet formation<br/>in microfluidic channels'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Korczyk&nbsp;PM</span>, <span class="nopmbm">van Steijn&nbsp;V</span>, <span class="pmbm">Blonski&nbsp;S</span>, <span class="pmbm">Zaremba&nbsp;D</span>, <span class="nopmbm">Beattie&nbsp;DA</span>, <span class="nopmbm">Garstecki&nbsp;P</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Nature Communications'' <u>10</u>:2528 (2019) [https://doi.org/10.1038/s41467-019-10505-5 CrossRef] | [{{SERVER}}/publications/Korczyk-2019-NatCommun.pdf PDF] [{{SERVER}}/publications/supplementary/Korczyk-2019-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">  
* '''Accounting for corner flow unifies the understanding of droplet formation<br/>in microfluidic channels'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Korczyk&nbsp;PM</span>, <span class="nopmbm">van Steijn&nbsp;V</span>, <span class="pmbm">Blonski&nbsp;S</span>, <span class="pmbm">Zaremba&nbsp;D</span>, <span class="nopmbm">Beattie&nbsp;DA</span>, <span class="nopmbm">Garstecki&nbsp;P</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Nature Communications'' <u>10</u>:2528 (2019) [https://doi.org/10.1038/s41467-019-10505-5 CrossRef] | [{{SERVER}}/publications/Korczyk-2019-NatCommun.pdf PDF] [{{SERVER}}/publications/supplementary/Korczyk-2019-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">  


* '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
* '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px">


* '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px">
* '''Robin-type boundary conditions in transition from reaction-diffusion equations in&nbsp;3D&nbsp;domains to equations in 2D domains'''<br style="line-height: 50%; margin-bottom:10px"/><span class="nopmbm">Bobrowski&nbsp;A</span>, <span class="pmbm">Lipniacki&nbsp;T</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Journal of Differential Equations'' (2019) [https://doi.org/10.1016/j.jde.2019.08.022 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
 
* '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński&nbsp;S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px">


* '''An information-theoretic framework for deciphering pleiotropic and noisy<br/>biochemical signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Jetka T</span>, <span class="pmbm">Nienałtowski K</span>, <span class="nopmbm">Filippi S</span>, <span class="nopmbm">Stumpf MPH</span>, <span class="pmbm">Komorowski M</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:4591 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30389942 PubMed] [http://dx.doi.org/10.1038/s41467-018-07085-1 CrossRef] |&nbsp;[http://pmbm.ippt.pan.pl/publications/Jetka-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Jetka-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">
* '''An information-theoretic framework for deciphering pleiotropic and noisy<br/>biochemical signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Jetka T</span>, <span class="pmbm">Nienałtowski K</span>, <span class="nopmbm">Filippi S</span>, <span class="nopmbm">Stumpf MPH</span>, <span class="pmbm">Komorowski M</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:4591 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30389942 PubMed] [http://dx.doi.org/10.1038/s41467-018-07085-1 CrossRef] |&nbsp;[http://pmbm.ippt.pan.pl/publications/Jetka-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Jetka-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">

Revision as of 15:26, 28 August 2019

Laboratory of Modeling in Biology and Medicine

biophysics  |  systems biology  |  bioengineering


    

Head:
Prof. Tomasz Lipniacki — institutional www
e-mail: tlipnia@ippt.pan.pl or tomek@rice.edu
phone: +48 22 8261281 ext. 409
room: 325



Recent publications of our Lab:


  • Accounting for corner flow unifies the understanding of droplet formation
    in microfluidic channels
    Korczyk PM, van Steijn V, Blonski S, Zaremba D, Beattie DA, Garstecki P.
    Nature Communications 10:2528 (2019) CrossRef | PDF SuppInfo-PDF
  • The limited information capacity of cross-reactive sensors drives the evolutionary
    expansion of signaling
    Komorowski M, Tawfik DS.
    Cell Systems 8(1):76–85.e6 (2019) PubMed CrossRef
  • Robin-type boundary conditions in transition from reaction-diffusion equations in 3D domains to equations in 2D domains
    Bobrowski A, Lipniacki T.
    Journal of Differential Equations (2019) CrossRef
  • Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways
    Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T.
    Nature Communications 9:493 (2018) PubMed CrossRef | PDF SuppInfo-PDF SuppData SuppMovies SuppCode
  • An information-theoretic framework for deciphering pleiotropic and noisy
    biochemical signaling
    Jetka T, Nienałtowski K, Filippi S, Stumpf MPH, Komorowski M.
    Nature Communications 9:4591 (2018) PubMed CrossRef | PDF SuppInfo-PDF
  • Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers
    Pierini F, Lanzi M, Nakielski P, Pawłowska S, Urbanek O, Zembrzycki K, Kowalewski TA.
    Macromolecules 50(13):4972–81 (2017) CrossRef
  • Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis
    Adimy M    , Chekroun A, Kaźmierczak B.
    Journal of Differential Equations 262(7):4085–4128 (2017) CrossRef
  • The propagation phenomenon of solutions of a parabolic problem on the sphere
    Kazmierczak B, Tsai J-C, Bialecki S.
    Mathematical Models and Methods in Applied Sciences 28(10):2001–2067 (2018) CrossRef


      More publications...


To learn more on our research, you may read our perspective on regulatory pathway modeling (a book chapter in Polish).

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