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* '''Quantitative determination of mechanical stability in the novel coro-navirus spike protein'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Moreira RA</span>, <span class="nopmbm">Chwastyk M</span>, <span class="nopmbm">Baker JL</span>, <span class="nopmbm">Guzman HV</span>, <span class="pmbm">Poma AB</span><br style="line-height: 50%; margin-bottom:10px"/>''Nanoscale'' <u>12</u>:16409 (2020) [https://doi.org/10.1039/D0NR03969A CrossRef]
* '''Quantitative determination of mechanical stability in the novel coro-navirus spike protein'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Moreira RA</span>, <span class="nopmbm">Chwastyk M</span>, <span class="nopmbm">Baker JL</span>, <span class="nopmbm">Guzman HV</span>, <span class="pmbm">Poma AB</span><br style="line-height: 50%; margin-bottom:10px"/>''Nanoscale'' <u>12</u>:16409 (2020) [https://doi.org/10.1039/D0NR03969A CrossRef]


* '''Ultraviolet light-assisted electrospinning of core–shell fully cross-linked P(NIPAAm-<i>co</i>-NIPMAAm) hydrogel-based nanofibers for thermally-induced drug delivery self-regulation'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Pawłowska&nbsp;S</span>, <span class="pmbm">Rinoldi&nbsp;C</span>, <span class="pmbm">Nakielski&nbsp;P</span>, <span class="pmbm">Ziai&nbsp;Y</span>, <span class="nopmbm">Urbanek&nbsp;O</span>, <span class="nopmbm">Li&nbsp;X</span>, <span class="pmbm">Kowalewski&nbsp;TA</span>, <span class="nopmbm">Ding&nbsp;B</span>, <span class="pmbm">Pierini&nbsp;F</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Advanced Materials Interfaces'' 2000247 (2020) [https://doi.org/10.1002/admi.202000247 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppMovie.mp4 SuppMovie-MP4]  [https://onlinelibrary.wiley.com/doi/10.1002/admi.202070064 CoverPicture]
* '''Multifunctional platform based on electrospun nanofibers and plasmonic hydrogel: A smart nanostructured pillow for near-infrared light-driven biomedical applications'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Nakielski&nbsp;P</span>,  <span class="pmbm">Pawłowska&nbsp;S</span>, <span class="pmbm">Rinoldi&nbsp;C</span>, <span class="pmbm">Ziai&nbsp;Y</span>, <span class="nopmbm">De&nbsp;Sio&nbsp;L</span>, <span class="nopmbm">Urbanek&nbsp;O</span>, <span class="pmbm">Zembrzycki&nbsp;K</span>, <span class="pmbm">Pruchniewski&nbsp;M</span>, <span class="nopmbm">Lanzi&nbsp;M</span>, <span class="nopmbm">Salatelli&nbsp;E</span>, <span class="nopmbm">Calogero&nbsp;A</span>, <span class="pmbm">Kowalewski&nbsp;TA</span>, <span class="nopmbm">Yarin&nbsp;AL</span>, <span class="pmbm">Pierini&nbsp;F</span><br style="line-height: 50%; margin-bottom:10px"/>''ACS Applied Materials & Interfaces'' (accepted) [https://dx.doi.org/10.1021/acsami.0c13266 CrossRef]


* '''Accounting for corner flow unifies the understanding of droplet formation<br/>in microfluidic channels'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Korczyk&nbsp;PM</span>, <span class="nopmbm">van Steijn&nbsp;V</span>, <span class="pmbm">Blonski&nbsp;S</span>, <span class="pmbm">Zaremba&nbsp;D</span>, <span class="nopmbm">Beattie&nbsp;DA</span>, <span class="nopmbm">Garstecki&nbsp;P</span>.<br style="line-height: 50%; margin-bottom:10px"/> ''Nature Communications'' <u>10</u>:2528 (2019) [https://doi.org/10.1038/s41467-019-10505-5 CrossRef] | [{{SERVER}}/publications/Korczyk-2019-NatCommun.pdf PDF] [{{SERVER}}/publications/supplementary/Korczyk-2019-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">
* '''Ultraviolet light-assisted electrospinning of core–shell fully cross-linked P(NIPAAm-<i>co</i>-NIPMAAm) hydrogel-based nanofibers for thermally-induced drug delivery self-regulation'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Pawłowska&nbsp;S</span>, <span class="pmbm">Rinoldi&nbsp;C</span>, <span class="pmbm">Nakielski&nbsp;P</span>, <span class="pmbm">Ziai&nbsp;Y</span>, <span class="nopmbm">Urbanek&nbsp;O</span>, <span class="nopmbm">Li&nbsp;X</span>, <span class="pmbm">Kowalewski&nbsp;TA</span>, <span class="nopmbm">Ding&nbsp;B</span>, <span class="pmbm">Pierini&nbsp;F</span><br style="line-height: 50%; margin-bottom:10px"/>''Advanced Materials Interfaces'' 2000247 (2020) [https://doi.org/10.1002/admi.202000247 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppMovie.mp4 SuppMovie-MP4] [https://onlinelibrary.wiley.com/doi/10.1002/admi.202070064 CoverPicture]


* '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
* '''Accounting for corner flow unifies the understanding of droplet formation<br/>in microfluidic channels'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Korczyk&nbsp;PM</span>, <span class="nopmbm">van Steijn&nbsp;V</span>, <span class="pmbm">Blonski&nbsp;S</span>, <span class="pmbm">Zaremba&nbsp;D</span>, <span class="nopmbm">Beattie&nbsp;DA</span>, <span class="nopmbm">Garstecki&nbsp;P</span><br style="line-height: 50%; margin-bottom:10px"/> ''Nature Communications'' <u>10</u>:2528 (2019) [https://doi.org/10.1038/s41467-019-10505-5 CrossRef] | [{{SERVER}}/publications/Korczyk-2019-NatCommun.pdf PDF] [{{SERVER}}/publications/supplementary/Korczyk-2019-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">  


* '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński&nbsp;S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px">
* '''The limited information capacity of cross-reactive sensors drives the evolutionary<br/>expansion of signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Komorowski M</span>, <span class="nopmbm">Tawfik DS</span><br style="line-height: 50%; margin-bottom:10px"/>''Cell Systems'' <u>8</u>(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]<br style="line-height: 100%; margin-bottom:16px">


* '''An information-theoretic framework for deciphering pleiotropic and noisy<br/>biochemical signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Jetka T</span>, <span class="pmbm">Nienałtowski K</span>, <span class="nopmbm">Filippi S</span>, <span class="nopmbm">Stumpf MPH</span>, <span class="pmbm">Komorowski M</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:4591 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30389942 PubMed] [http://dx.doi.org/10.1038/s41467-018-07085-1 CrossRef] |&nbsp;[http://pmbm.ippt.pan.pl/publications/Jetka-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Jetka-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">
* '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Czerkies M</span>, <span class="pmbm">Korwek Z</span>, <span class="pmbm">Prus W</span>, <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="pmbm">Tudelska K</span>, <span class="pmbm">Błoński&nbsp;S</span>, <span class="nopmbm">Kimmel M</span>, <span class="nopmbm">Brasier AR</span>, <span class="pmbm">Lipniacki T</span><br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]<br style="line-height: 100%; margin-bottom:16px">


* '''Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Pierini F</span>, <span class="nopmbm">Lanzi M</span>, <span class="pmbm">Nakielski P</span>, <span class="pmbm">Pawłowska S</span>, <span class="nopmbm">Urbanek O</span>, <span class="pmbm">Zembrzycki K</span>, <span class="pmbm">Kowalewski TA</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Macromolecules'' <u>50</u>(13):4972–81 (2017) [http://dx.doi.org/10.1021/acs.macromol.7b00857 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
* '''An information-theoretic framework for deciphering pleiotropic and noisy<br/>biochemical signaling'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Jetka T</span>, <span class="pmbm">Nienałtowski K</span>, <span class="nopmbm">Filippi S</span>, <span class="nopmbm">Stumpf MPH</span>, <span class="pmbm">Komorowski M</span><br style="line-height: 50%; margin-bottom:10px"/>''Nature Communications'' <u>9</u>:4591 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30389942 PubMed] [http://dx.doi.org/10.1038/s41467-018-07085-1 CrossRef] |&nbsp;[http://pmbm.ippt.pan.pl/publications/Jetka-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Jetka-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF]<br style="line-height: 100%; margin-bottom:16px">


* '''Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis'''<span class="nopmbm"><br style="line-height: 50%; margin-bottom:10px"/>Adimy M</span>, <span class="nopmbm">Chekroun A</span>, <span class="pmbm">Kaźmierczak B</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Journal of Differential Equations'' <u>262</u>(7):4085–4128 (2017) [http://dx.doi.org/10.1016/j.jde.2016.12.009 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
* '''Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Pierini F</span>, <span class="nopmbm">Lanzi M</span>, <span class="pmbm">Nakielski P</span>, <span class="pmbm">Pawłowska S</span>, <span class="nopmbm">Urbanek O</span>, <span class="pmbm">Zembrzycki K</span>, <span class="pmbm">Kowalewski TA</span><br style="line-height: 50%; margin-bottom:10px"/>''Macromolecules'' <u>50</u>(13):4972–81 (2017) [http://dx.doi.org/10.1021/acs.macromol.7b00857 CrossRef]<br style="line-height: 100%; margin-bottom:16px">


* '''The propagation phenomenon of solutions of a parabolic problem on the sphere'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Kazmierczak B</span>, <span class="nopmbm">Tsai J-C</span>, <span class="pmbm">Bialecki S</span>.<br style="line-height: 50%; margin-bottom:10px"/>''Mathematical Models and Methods in Applied Sciences'' <u>28</u>(10):2001–2067 (2018) [http://doi.org/10.1142/S0218202518500483 CrossRef]
* '''Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis'''<span class="nopmbm"><br style="line-height: 50%; margin-bottom:10px"/>Adimy M</span>, <span class="nopmbm">Chekroun A</span>, <span class="pmbm">Kaźmierczak B</span><br style="line-height: 50%; margin-bottom:10px"/>''Journal of Differential Equations'' <u>262</u>(7):4085–4128 (2017) [http://dx.doi.org/10.1016/j.jde.2016.12.009 CrossRef]<br style="line-height: 100%; margin-bottom:16px">
 
* '''The propagation phenomenon of solutions of a parabolic problem on the sphere'''<br style="line-height: 50%; margin-bottom:10px"/><span class="pmbm">Kazmierczak B</span>, <span class="nopmbm">Tsai J-C</span>, <span class="pmbm">Bialecki S</span><br style="line-height: 50%; margin-bottom:10px"/>''Mathematical Models and Methods in Applied Sciences'' <u>28</u>(10):2001–2067 (2018) [http://doi.org/10.1142/S0218202518500483 CrossRef]
<br/>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Publications | &rarr; All publications]]
<br/>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Publications | &rarr; All publications]]


<br/>
<br/>
To learn more on our research, you may read [http://pmbm.ippt.pan.pl/publications/chapters/Kochanczyk_i_inni_2018_rozdzial_22.pdf our perspective on regulatory pathway modeling (a&nbsp;book chapter in Polish)].
To learn more on our research, you may read [http://pmbm.ippt.pan.pl/publications/chapters/Kochanczyk_i_inni_2018_rozdzial_22.pdf our perspective on regulatory pathway modeling (a&nbsp;book chapter in Polish)].

Revision as of 11:49, 26 November 2020

Laboratory of Modeling in Biology and Medicine

biophysics  ·  systems biology  ·  bioengineering


    

Head:
Prof. Tomasz Lipniacki — institutional www
e-mail: tlipnia@ippt.pan.pl or tomek@rice.edu
phone: +48 22 8261281 ext. 409
room: 325



Recent publications of our Lab:

  • Super-spreading events initiated the exponential growth phase of COVID-19 with R0 higher than initially estimated
    Kochańczyk M, Grabowski F, Lipniacki T
    Royal Society Open Science 7:200786 (2020) CrossRef | PDF SuppInfo-PDF Correspondence
  • Quantitative determination of mechanical stability in the novel coro-navirus spike protein
    Moreira RA, Chwastyk M, Baker JL, Guzman HV, Poma AB
    Nanoscale 12:16409 (2020) CrossRef
  • Multifunctional platform based on electrospun nanofibers and plasmonic hydrogel: A smart nanostructured pillow for near-infrared light-driven biomedical applications
    Nakielski P, Pawłowska S, Rinoldi C, Ziai Y, De Sio L, Urbanek O, Zembrzycki K, Pruchniewski M, Lanzi M, Salatelli E, Calogero A, Kowalewski TA, Yarin AL, Pierini F
    ACS Applied Materials & Interfaces (accepted) CrossRef
  • Ultraviolet light-assisted electrospinning of core–shell fully cross-linked P(NIPAAm-co-NIPMAAm) hydrogel-based nanofibers for thermally-induced drug delivery self-regulation
    Pawłowska S, Rinoldi C, Nakielski P, Ziai Y, Urbanek O, Li X, Kowalewski TA, Ding B, Pierini F
    Advanced Materials Interfaces 2000247 (2020) CrossRef | SuppInfo-PDF SuppMovie-MP4 CoverPicture
  • Accounting for corner flow unifies the understanding of droplet formation
    in microfluidic channels

    Korczyk PM, van Steijn V, Blonski S, Zaremba D, Beattie DA, Garstecki P
    Nature Communications 10:2528 (2019) CrossRef | PDF SuppInfo-PDF
  • The limited information capacity of cross-reactive sensors drives the evolutionary
    expansion of signaling

    Komorowski M, Tawfik DS
    Cell Systems 8(1):76–85.e6 (2019) PubMed CrossRef
  • Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways
    Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T
    Nature Communications 9:493 (2018) PubMed CrossRef | PDF SuppInfo-PDF SuppData SuppMovies SuppCode
  • An information-theoretic framework for deciphering pleiotropic and noisy
    biochemical signaling

    Jetka T, Nienałtowski K, Filippi S, Stumpf MPH, Komorowski M
    Nature Communications 9:4591 (2018) PubMed CrossRefPDF SuppInfo-PDF
  • Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers
    Pierini F, Lanzi M, Nakielski P, Pawłowska S, Urbanek O, Zembrzycki K, Kowalewski TA
    Macromolecules 50(13):4972–81 (2017) CrossRef
  • Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis
    Adimy M
    , Chekroun A, Kaźmierczak B
    Journal of Differential Equations 262(7):4085–4128 (2017) CrossRef
  • The propagation phenomenon of solutions of a parabolic problem on the sphere
    Kazmierczak B, Tsai J-C, Bialecki S
    Mathematical Models and Methods in Applied Sciences 28(10):2001–2067 (2018) CrossRef


      → All publications


To learn more on our research, you may read our perspective on regulatory pathway modeling (a book chapter in Polish).