ShuttleTracker: Difference between revisions
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* Windows 64-bit installer: <!--[{{SERVER}}/software/shuttletracker/release/shuttletracker-1.2.0-x86_win64-setup.exe shuttletracker-1.2.0-x86_win64-setup.exe]--><span style="background:yellow"> ''' TODO ''' </span><accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with MSVC14 on Windows 10, and tested on Windows 10 and Windows 8.<br/><br/>SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:<br/><div align="center"><span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">certUtil -hashfile <i>path_to_installer</i> MD5</span></div>MD5 sum of untainted shuttletracker-1.2.0-x86_win64-setup.exe is <!--'''730658ddc8a5951e1ed832a81a260b7a'''--><span style="background:yellow"> ''' TODO ''' </span>.<br/></accordion> | * Windows 64-bit installer: <!--[{{SERVER}}/software/shuttletracker/release/shuttletracker-1.2.0-x86_win64-setup.exe shuttletracker-1.2.0-x86_win64-setup.exe]--><span style="background:yellow"> ''' TODO ''' </span><accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with MSVC14 on Windows 10, and tested on Windows 10 and Windows 8.<br/><br/>SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:<br/><div align="center"><span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">certUtil -hashfile <i>path_to_installer</i> MD5</span></div>MD5 sum of untainted shuttletracker-1.2.0-x86_win64-setup.exe is <!--'''730658ddc8a5951e1ed832a81a260b7a'''--><span style="background:yellow"> ''' TODO ''' </span>.<br/></accordion> | ||
* macOS application bundle (zipped "app"): | * macOS application bundle (zipped "app"): [{{SERVER}}/software/shuttletracker/release/shuttletracker-1.3.0-x86_64-darwin17.zip shuttletracker-1.3.0-x86_64-darwin17.zip]<accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with XCode 8 and tested under macOS 10.13 (High Sierra). It is likely incompatible with previous Mac operating system releases.<br/><br/>SECURITY: MD5 sum of the downloadable ZIP archive can be checked in Terminal:<div align="center"> <span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">md5 <i>path_to_zip</i></span></div>MD5 sum of untainted shuttletracker-1.3.0-x86_64-darwin17.zip is '''bbaf943adc1be6a5061278c366c7c451'''<span style="background:yellow"> ''' TODO ''' </span>.</accordion> | ||
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Revision as of 16:26, 30 September 2019
of fluorescent reporters
ShuttleTracker can detect stained cell nuclei, generate corresponding annular perinuclear extensions, quantify geometric and photometric properties of detected objects, and perform frame-to-frame nuclei tracking. Parameters of the image processing algorithms can be changed manually and the effects of these changes can be seen nearly immediately overlaid on currently displayed microscopic images. A key capability of ShuttleTracker is that nuclear contours and tracks can be generated automatically and then corrected manually. The tool is scriptable.
The latest ShuttleTracker version is 1.3.0.
Stand-alone binary executables for Windows and Mac
- Windows 64-bit installer: TODO
SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:
- macOS application bundle (zipped "app"): shuttletracker-1.3.0-x86_64-darwin17.zip
SECURITY: MD5 sum of the downloadable ZIP archive can be checked in Terminal:
Containers for Linux
- A docker-based recipe for a Singularity container: shuttletracker-1.3.0-singularity.recipe
singularity build shuttletracker.simg shuttletracker-1.3.0-singularity.recipe
LAUNCHING the simulator within a container (in terminal):
singularity exec shuttletracker.simg /opt/local/bin/ShuttleTracker
Source code
ShuttleTracker source code is distributed under GNU GPL v3.0.
- C++ source code: shuttletracker-1.3.0-source.tar.gz
tar xfz shuttletracker-1.3.0-source.tar.gz cd shuttletracker-1.3.0-source mkdir build && cd build cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/local/ make -j4 && make install
Documentation
- User's manual: shuttletracker-1.3.0-manual.pdf
- An archive with tutorial instructions and images: TODO
Contact
The lead software developer is Marek Kochańczyk. For both user's and developer's queries please use the following e-mail address: shuttletracker.software@gmail.com