Paweł Kocieniewski: Difference between revisions
From Laboratory of Modeling in Biology and Medicine
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<div align="center">'''Senior Programmer, Ph.D. Candidate'''</div> | <div align="center">'''Senior Programmer, Ph.D. Candidate'''</div> | ||
[[Image:Pawel_Kocieniewski.jpg|right| | [[Image:Pawel_Kocieniewski.jpg|right|frameless|link=|alt=Pawel's photo]] | ||
===Contact=== | ===Contact=== | ||
e-mail at gmail.com: pawel.kocieniewski<br /> | e-mail at gmail.com: pawel.kocieniewski<br /> | ||
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===Publications=== | ===Publications=== | ||
* <span class="nopmbm">Varga A</span>, <span class="nopmbm">Ehrenreiter K</span>, <span class="nopmbm">Aschenbrenner B</span>, <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Kochanczyk M</span>, <span class="pmbm">Lipniacki T</span>, <span class="nopmbm">Baccarini M</span>. '''RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα''', ''Sci Signal'' <u>10</u>(469):eaai8482 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28270557 PubMed] [http://dx.doi.org/10.1126/scisignal.aai8482 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Varga-2017-SciSignal-SuppCode.bngl SuppCode-BioNetGen] | * <span class="nopmbm">Varga A</span>, <span class="nopmbm">Ehrenreiter K</span>, <span class="nopmbm">Aschenbrenner B</span>, <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Kochanczyk M</span>, <span class="pmbm">Lipniacki T</span>, <span class="nopmbm">Baccarini M</span>. '''RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα''', ''Sci Signal'' <u>10</u>(469):eaai8482 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28270557 PubMed] [http://dx.doi.org/10.1126/scisignal.aai8482 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Varga-2017-SciSignal-SuppCode.bngl SuppCode-BioNetGen] | ||
* <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u> | * <span class="pmbm">Kochańczyk M</span>, <span class="pmbm">Kocieniewski P</span>, <span class="nopmbm">Kozłowska E</span>, <span class="pmbm">Jaruszewicz-Błońska J</span>, <span class="nopmbm">Sparta B</span>, <span class="nopmbm">Pargett M</span>, <span class="nopmbm">Albeck JG</span>, <span class="nopmbm">Hlavacek WS</span>, <span class="pmbm">Lipniacki T</span>. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' <u>7</u>:38244 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28045041 PubMed] [http://dx.doi.org/10.1038/srep38244 CrossRef] | [http://www.nature.com/articles/srep38244.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgen-UPDATED.zip SuppCode-BNG] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeMatlabMatcont.zip SuppCode-MatCont] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgenNoisyEGFR.zip SuppCode-BNG-noisy] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeComsol.zip SuppCode-Comsol] [http://pmbm.ippt.pan.pl/publications/supplementary/Kochanczyk-2017-SciRep-Movie.mp4 SuppMovie] | ||
* <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Lipniacki T</span>. '''MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response''', ''Phys Biol'' <u>10</u>(3):035006 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23735655 PubMed] [http://dx.doi.org/10.1088/1478-3975/10/3/035006 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Kocieniewski-2013-PhysBiol-MS.pdf PDF-ms] [http://pmbm.ippt.pan.pl/publications/supplementary/Kocieniewski-2013-PhysBiol-SourceCode.zip Code-BioNetGen] | * <span class="pmbm">Kocieniewski P</span>, <span class="pmbm">Lipniacki T</span>. '''MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response''', ''Phys Biol'' <u>10</u>(3):035006 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23735655 PubMed] [http://dx.doi.org/10.1088/1478-3975/10/3/035006 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Kocieniewski-2013-PhysBiol-MS.pdf PDF-ms] [http://pmbm.ippt.pan.pl/publications/supplementary/Kocieniewski-2013-PhysBiol-SourceCode.zip Code-BioNetGen] | ||
Latest revision as of 13:52, 7 June 2018
Senior Programmer, Ph.D. Candidate
Contact
e-mail at gmail.com: pawel.kocieniewski
tel.: +48 22 8261280 ext. 411
room: 326
Institute of Fundamental Technological Research
Polish Academy of Sciences
Pawińskiego 5B, 02-106 Warsaw, Poland
Publications
- Varga A, Ehrenreiter K, Aschenbrenner B, Kocieniewski P, Kochanczyk M, Lipniacki T, Baccarini M. RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα, Sci Signal 10(469):eaai8482 (2017) PubMed CrossRef | SuppCode-BioNetGen
- Kochańczyk M, Kocieniewski P, Kozłowska E, Jaruszewicz-Błońska J, Sparta B, Pargett M, Albeck JG, Hlavacek WS, Lipniacki T. Relaxation oscillations and hierarchy of feedbacks in MAPK signaling, Sci Rep 7:38244 (2017) PubMed CrossRef | PDF SuppInfo-PDF SuppCode-BNG SuppCode-MatCont SuppCode-BNG-noisy SuppCode-Comsol SuppMovie
- Kocieniewski P, Lipniacki T. MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response, Phys Biol 10(3):035006 (2013) PubMed CrossRef | PDF-ms Code-BioNetGen
- Kocieniewski P, Faeder JR, Lipniacki T. The interplay of double phosphorylation and scaffolding in MAPK pathways, J Theor Biol 295:116-124 (2012; e-pub 2011) PubMed CrossRef | PDF-ms
- Jamora C, Lee P, Kocieniewski P, Alonso L, Azhar M, Hosokawa R, Chai Y, Fuchs E. A signaling pathway involving TGFß2 and Snail in hair follicle morphogenesis, PLoS Biology 3(1):e11 (2005) PubMed CrossRef | PDF
- Jamora C, DasGupta R, Kocieniewski P, Fuchs E. Links between signal transduction, transcription and adhesion in epithelial bud development, Nature 422(6929): 317-22 (2003) PubMed CrossRef | PDF-ms
- Solway J, Bellam S, Dowell M, Camoretti-Mercado B, Dulin N, Fernandes D, Halayko A, Kocieniewski P, Kogut P, Lakser O, Liu HW, McCauley J, McConville J, Mitchell R. Actin dynamics: a potential integrator of smooth muscle (dys-)function and contractile apparatus gene expression in asthma, Chest 123(3 Suppl):392S-8S (2003) PubMed CrossRef
- Liu HW, Halayko AJ, Fernandes DJ, Harmon GS, McCauley JA, Kocieniewski P, McConville J, Fu Y, Forsythe SM, Kogut P, Bellam S, Dowell M, Churchill J, Lesso H, Kassiri K, Mitchell RW, Hershenson MB, Camoretti-Mercado B, Solway J. The RhoA/Rho kinase pathway regulates nuclear localization of serum response factor, Am J Respir Cell Mol Biol 29(1):39-47 (2003) PubMed CrossRef
