ShuttleTracker: Difference between revisions
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* Windows 64-bit installer: [{{SERVER}}/software/shuttletracker/release/shuttletracker-1.0.0-x86_win64-setup.exe shuttletracker-1.0.0-x86_win64-setup.exe]<accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with MSVC14 on Windows 10, and tested on Windows 10 and Windows 8.<br/><br/>SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:<br/><div align="center"><span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">certUtil -hashfile <i>path_to_installer</i> MD5</span></div>MD5 sum of untainted shuttletracker-1.0.0-x86_win64-setup.exe is TODO<br/></accordion> | * Windows 64-bit installer: [{{SERVER}}/software/shuttletracker/release/shuttletracker-1.0.0-x86_win64-setup.exe shuttletracker-1.0.0-x86_win64-setup.exe]<accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with MSVC14 on Windows 10, and tested on Windows 10 and Windows 8.<br/><br/>SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:<br/><div align="center"><span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">certUtil -hashfile <i>path_to_installer</i> MD5</span></div>MD5 sum of untainted shuttletracker-1.0.0-x86_win64-setup.exe is TODO<br/></accordion> | ||
* macOS application bundle (zipped "app"): [{{SERVER}}/software/shuttletracker/release/shuttletracker-1.0.0-x86_64- | * macOS application bundle (zipped "app"): [{{SERVER}}/software/shuttletracker/release/shuttletracker-1.0.0-x86_64-darwin17.zip shuttletracker-1.0.0-x86_64-darwin17.zip]<accordion parent="accordion" heading="How to verify and run">COMPATIBILITY: This software was built with XCode 8 and tested under macOS 10.12 (Sierra). It is likely incompatible with previous Mac operating system releases. It has been confirmed to work on macOS 10.13 (High Sierra).<br/><br/>SECURITY: MD5 sum of the downloadable ZIP archive can be checked in Terminal:<div align="center"> <span style="font-family: Lucida Sans Typewriter,Lucida Console,monaco,Bitstream Vera Sans Mono,Consolas,Inconsolata,monospace;">md5 <i>path_to_zip</i></span></div><br/>MD5 sum of untainted shuttletracker-1.0.0-x86_64-darwin17.zip is 22a887bbcaf258eefa000f772c52ca42.</accordion> | ||
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Revision as of 23:55, 29 January 2019
of fluorescent reporters in living cells
ShuttleTracker can detect stained cell nuclei, generate corresponding annular perinuclear extensions, quantify geometric and photometric properties of detected objects, and perform frame-to-frame nuclei tracking. Parameters of the image processing algorithms can be changed manually and the effects of these changes can be seen nearly immediately overlaid on currently displayed microscopic images. A key capability of ShuttleTracker is that nuclear contours and tracks can be generated automatically and then corrected manually. The tool is scriptable.
The latest ShuttleTracker version is 1.0.0.
Example session
Stand-alone binary executables
- Windows 64-bit installer: shuttletracker-1.0.0-x86_win64-setup.exe
SECURITY: The downloadable installer is not signed with a certificate (so in windows terms it comes from an "unknown publisher") but its integrity can be checked manually in command line using a Windows pre-installed utility:
- macOS application bundle (zipped "app"): shuttletracker-1.0.0-x86_64-darwin17.zip
SECURITY: MD5 sum of the downloadable ZIP archive can be checked in Terminal:
MD5 sum of untainted shuttletracker-1.0.0-x86_64-darwin17.zip is 22a887bbcaf258eefa000f772c52ca42.
Containers
- A docker-based recipe for a Singularity container: shuttletracker-1.0.0-singularity.recipe
singularity build shuttletracker.simg shuttletracker-1.0.0-singularity.recipe
LAUNCHING the simulator within a container (in terminal):
singularity exec shuttletracker-1.0.0.simg /opt/local/bin/ShuttleTracker
Source code
ShuttleTracker source code is distributed under GNU GPL v3.0.
- C++ source code: shuttletracker-1.0.0-source.tar.gz
tar xfz shuttletracker-VERSION-source.tar.gz cd shuttletracker-VERSION-source mkdir build && cd build cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/local/ make -j4 && make install
Documentation
- User's manual: shuttletracker-1.0.0-manual.pdf
- An archive with tutorial instructions and images: TODO
Contact
The lead software developer is Marek Kochańczyk. For both user's and developer's queries please use the following e-mail address: shuttletracker.software@gmail.com