2025-10-20T08:32:06Z

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===2025===
* Sabbagh F, Zakrzewska A, Rybak D, Król J, Abdi A, Nakielski P, Pierini F. '''Transdermal Drug Delivery Systems Powered by Artificial Intelligence''', ''Advanced Healthcare Materials'' ():e03030 (2025) [https://doi.org/10.1002/adhm.202503030 CrossRef]

* Zainab I, Naseem Z, Batool SR, Pierini F, Kizilel S, Nazeer MA. '''Nanomaterials for biomedical applications''', ''Beilstein Journal of Nanotechnology'' 16:1499–1503 (2025) [https://doi.org/10.3762/bjnano.16.105 CrossRef]

* Pragnąca A, Antolak A, Krysiak ZJ, Leśniak M, Borkowska A, Zdanowski R, Malek K. '''Marker-independent vibrational spectroscopy imaging recognizes the hypoxia effect in the human brain endothelium''', ''Scientific Reports'' (2025) [https://doi.org/10.1038/s41598-025-11000-2 CrossRef]

* Lanzi M, Pierini F, Medri R, Salatelli E, Marinelli M. '''Efficient Bulk-Heterojunction Solar Cells Based on Symmetrically Disubstituted Polyalkyloxythiophenes at Low Synthetic Complexity''', ''Macromolecular Chemistry and Physics'' 226(17):e00184-1-12 (2025) [https://doi.org/10.1002/macp.202500184 CrossRef]

* Ahmed Abdullah AA, Alegret N, Almeida B, Pierini F, ... . '''Interfacing with the Brain: How Nanotechnology Can Contribute''', ''ACS Nano'' 19:11, 10630-10717 (2025) [http://dx.doi.org/10.1021/acsnano.4c10525 CrossRef]

* Olivos Ramirez G, Cofas Vargas LF, Tobias M, Poma Bernaola AM. '''Conformational and Stability Analysis of SARS-CoV-2 Spike Protein Variants by Molecular Simulation''', ''Pathogens'' 14:274, 1-19 (2025) [http://dx.doi.org/10.3390/pathogens14030274 CrossRef]

* Rabcuka J, Smethurst PA, Dammert K, Saker J, Aran G, Walsh GM, Tan JCG, Codinach M, McTaggart K, Marks DC, Bakker SJL, McMahon A, Di Angelantonio E, Roberts DJ, Błoński S, Korczyk PM, Shirakami A, Cardigan R, Swietach P. '''Assessing the kinetics of oxygen-unloading from red cells using FlowScore, a flow-cytometric proxy of the functional quality of blood''', ''eBioMedicine'' 111:105498-105498 (2025) [http://dx.doi.org/10.1016/j.ebiom.2024.105498 CrossRef]

* Gruca M, Bukowicki M, Ekiel-Jeżewska ML, Jose Manuel L, Kasprzak M. '''Brinkman-medium resistance hampers periodic motions of sedimenting particles''', ''ACTA MECHANICA'' 236:837-854 (2025) [http://dx.doi.org/10.1007/s00707-024-04146-z CrossRef]

* Jones AP, Haley MJ, Meadows MH, Gregory GE, Hannan CJ, Simmons AK, Bere LD, Lewis LD, Pedro O, Smith MJ, King AT, Evans D. Gareth R, Paszek P, Brough D, Pathmanaban ON, Couper K. '''Spatial mapping of immune cell environments in NF2-related schwannomatosis vestibular schwannoma''', ''Nature Communications'' 16:2944-1-18 (2025) [http://dx.doi.org/10.1038/s41467-025-57586-z CrossRef]

* Souza P, Borges-Araújo L, Christopher B, Rodrigo AM, Fabian G, Peter P, Liguo W, Hafez R, Borges-Araújo A, Cofas Vargas L, Luca M, Raúl M, Melo M, Sangwook W, Marrink S, Poma A, Sebastian T. '''GōMartini 3: From large conformational changes in proteins to environmental bias corrections''', ''Nature Communications'' 16:1-19 (2025) [http://dx.doi.org/10.1038/s41467-025-58719-0 CrossRef]

===2024===
* Kupikowska-Stobba B, Hui N, Iveta K, Jose Manuel L, Kasprzak M. '''Controlled lipid digestion in the development of functional and personalized foods for a tailored delivery of dietary fats''', ''Food Chemistry'' 466:142151, 1-30 (2024) [http://dx.doi.org/10.1016/j.foodchem.2024.142151 CrossRef]

* Liu L, Sznajder P, Ekiel-Jeżewska ML. '''Spectral analysis for elastica dynamics in a shear flow''', ''Physical Review Fluids'' 9:1, 014101-1-12 (2024) [http://dx.doi.org/10.1103/PhysRevFluids.9.014101 CrossRef]

* Melikhov;Y, Ekiel-Jeżewska ML. '''Attracting dynamical modes of highly elastic fibres settling under gravity in a viscous fluid''', ''JOURNAL OF FLUID MECHANICS'' 994, A13-1-20 (2024) [http://dx.doi.org/10.1017/jfm.2024.729 CrossRef]

* Słowicka AM, Xue N, Liu L, Nunes JK, Sznajder P, Stone HA, Ekiel-Jeżewska ML. '''Highly elastic fibers in a shear flow can form double helices''', ''New Journal of Physics'' 26:073011-1-18, 1367-2630 (2024) [http://dx.doi.org/10.1088/1367-2630/ad56c0 CrossRef]

* Prus W, Grabowski F, Koza P, Korwek Z, Czerkies M, Kochańczyk M, Lipniacki T. '''Type III interferons suppress influenza A virus infection independently of STAT activation by triggering cell death''' (submitted) [https://dx.doi.org/10.1101/2024.09.09.612051 CrossRef]

* Bartolewska M, Kosik-Kozioł A, Korwek Z, Krysiak Z, Devis M, Mazur M, Giuseppe F, Pierini F. '''Eumelanin-Enhanced Photothermal Disinfection of Contact Lenses Using a Sustainable Marine Nanoplatform Engineered with Electrospun Nanofibers''', ''Advanced Healthcare Materials'' 2402431-1-21, 2192-2659 (2024) [http://dx.doi.org/10.1002/adhm.202402431 CrossRef]

* Sznajder P, Zdybel P, Liu L, Ekiel-Jeżewska ML. '''Scaling law for a buckled elastic filament in a shear flow''', ''Physical Review E'' 110(2):025104-1-12, 2470-0045 (2024) [http://dx.doi.org/10.1103/PhysRevE.110.025104 CrossRef]

* Nałęcz-Jawecki P, Szyc P, Grabowski F, Kochańczyk M, Lipniacki T. '''Information transmission in a cell monolayer: A numerical study''' (submitted) [https://www.biorxiv.org/content/10.1101/2024.06.21.600012v1 CrossRef]

* Dudek I, Czerkies M, Kwiatek A. '''Differential expression of cytokines and elevated levels of MALAT1 - long non-coding RNA in response to non-structural proteins of Human Respiratory Syncytial Virus''', ''Virology'' (accepted) [https://dx.doi.org/10.1016/j.virol.2024.110127 CrossRef]

* Kaźmierczak B, Volpert V. '''Traveling waves in a model of calcium ions influx via mechanically stimulated membrane channels''', ''Math Meth Appl Sci'' 47(12):9769–9795 (2024) [https://dx.doi.org/10.1002/mma.10093 CrossRef]

* Dumbill R, Rabcuka J, Fallon J, Knight S, Hunter J, Voyce D, Barrett JT, Matt Ellen, Weissenbacher A-M, Kurniawan T, Blonski S, Korczyk PM, Ploeg RJ, Coussios C, Friend P, Swietach P. '''Impaired O2 unloading from stored blood results in diffusion-limited O2 release at tissues: evidence from human kidneys''', ''Blood'' 143(8):721-733, 0006-4971 (2024) [https://dx.doi.org/10.1182/blood.2023022385 CrossRef]

* Green R, Wang H, Botchey C, Zhang SNN, Wadsworth C, Tyrrell F, Letton J, McBain AH, Paszek P, Krašovec R, Knigh CG. '''Collective peroxide detoxification determines microbial mutation rate plasticity in E. coli''', ''PLOS Biology'' 22(7):e3002711 (2024) [https://doi.org/10.1371/journal.pbio.3002711 CrossRef]

* Feltham L, Moran J, Goldrick M, Lord E, Spiller DG, Cavet JS, Muldoon M, Roberts IS, Paszek P. '''Bacterial aggregation facilitates internalin-mediated invasion of Listeria monocytogenes''', ''Front Cell Infect Microbiol'' 14:1411124 (2024) [https://doi.org/10.3389/fcimb.2024.1411124 CrossRef]

* Ray A, Minh Tran TT, dos Santos Natividade R, Moreira RA, Simpson JD, Mohammed D, Koehler M, Petitjean SJL, Zhang Q, Bureau F, Gillet L, Poma AB, Alsteens D. '''Single-molecule investigation of the binding interface stability of SARS-CoV-2 variants with ACE2''', ''ACS Nanosci'' (accepted) [https://doi.org/10.1021/acsnanoscienceau.3c00060 CrossRef]

* Nakielski P, Kosik-Kozioł A, Rinoldi C, Rybak D, More N, Wechsler J, Lehmann TP, Głowacki M, Stepak B, Rzepna M, Marinelli M, Lanzi M, Seliktar D, Mohyeddinipour S, Sheyn D, Pierini F. '''Injectable PLGA microscaﬀolds with laser-induced enhanced microporosity for nucleus pulposus cell delivery''', ''Small'' 2404963-1-151, 1613-6810 (2024) [https://doi.org/10.1002/smll.202404963 CrossRef]

* Bartolewska M, Kosik-Kozioł A, Korwek Z, Krysiak Z, Montroni D, Mazur M, Falini G, Pierini F. '''Eumelanin-enhanced photothermal disinfection of contact lenses using a sustainable marine nanoplatform engineered with electrospun nanofibers''', ''Adv Healthcare Mater'' (accepted) [https://dx.doi.org/10.1002/adhm.202402431 CrossRef]

* Zargarian SS, Kupikowska-Stobba B, Kosik-Kozioł A, Bartolewska M, Zakrzewska A, Rybak D, Bochenek K, Osial M, Pierini F. '''Light-responsive biowaste-derived and bio-inspired textiles: Dancing between bio-friendliness and antibacterial functionality''', ''Mater Today Chem'' (accepted) [https://doi.org/10.1016/j.mtchem.2024.102281 CrossRef]

* Haghighat Bayan MA, Rinoldi C, Kosik-Kozioł A, Bartolewska M, Rybak D, Zargarian SS, Shah SA, Krysiak ZJ, Zhang S, Lanzi M, Nakielski P, Ding B, Pierini F. '''Solar-to-NIR light activable PHBV/ICG nanofiber-based face masks with on-demand combined photothermal and photodynamic antibacterial properties''', ''Adv Mater Technol'' (accepted) [https://dx.doi.org/10.1002/admt.202400450 CrossRef]

* Rybak D, Rinoldi C, Nakielski P, Du J, Haghighat Bayan MA, Zargarian SS, Pruchniewski M, Li X, Strojny-Cieslak B, Ding B, Pierini F. '''Injectable and self-healable nano-architectured hydrogel for NIR-light responsive chemo- and photothermal bacterial eradication''', ''J Mater Chem B'' (accepted) [https://doi.org/10.1039/D3TB02693K CrossRef]

* Ziai Y, Lanzi M, Rinoldi C, Zargarian SZ, Zakrzewska A, Kosik-Kozioł A, Nakielski P, Pierini F. '''Developing strategies to optimize the anchorage between electrospun nanofibers and hydrogels for multi-layered plasmonic biomaterials''', ''Nanoscale Adv'' (accepted) [https://doi.org/10.1039/D3NA01022H CrossRef]

* Haghighat Bayan MA, Rinoldi C, Rybak D, Zargarian SS, Zakrzewska A, Cegielska O, Põhako-Palu K, Zhang S, Stobnicka-Kupiec A, Górny RL, Nakielski P, Kogermann K, De Sio L, Ding B, Pierini F. '''Engineering surgical face masks with photothermal and photodynamic plasmonic nanostructures for enhancing filtration and on-demand pathogen eradication''', ''Biomaterials'' (accepted) [https://doi.org/10.1039/D3BM01125A CrossRef]

* Marinelli M, Lanzi M, Quadretti D, Ziai Y, Pierini F, Zanelli A, Medri R, Salatelli E, ''React Funct Polym'' (2024) [https://doi.org/10.1016/j.reactfunctpolym.2024.105928 CrossRef]

* Yarin AL, Pierini F, Zussman E, Lauricella M. '''Materials and electro-mechanical and biomedical devices based on nanofibers'' (book) [https://doi.org/10.1007/978-3-031-48439-1 CrossRef]

* Melikhov Y, Ekiel-Jeżewska ML '''Attracting dynamical modes of highly elastic fibres settling under gravity in a viscous fluid''', ''Journal of Fluid Mechanics'' 994:A13-1-20, 0022-1120 (2024) [http://dx.doi.org/10.1017/jfm.2024.729 CrossRef]

* Zangoli M, Monti F, Zanelli A, Marinelli M, Flammini S, Spallacci N, Zakrzewska A, Lanzi M, Salatelli E, Pierini F, Di Maria F. '''Multifunctional photoelectroactive materials for optoelectronic applications based on thieno[3,4-b]pyrazines and thieno[1,2,5]thiadiazoles''', ''Chem–Eur J'' (accepted) [https://doi.org/10.1002/chem.202303590 CrossRef]

* Zargarian SS, Zakrzewska A, Kosik-Kozioł A, Bartolewska M, Shah SA, Li X, Su Q, Petronella F, Marinelli M, De Sio L, Lanzi M, Ding B, Pierini F. '''Advancing resource sustainability with green photothermal materials: Insights from organic waste-derived and bioderived sources''', ''Nanotech Reviews'', ''Nanotechnology Reviews'' 13:1 2191-9097, 20240100-1-39 (2024) [http://dx.doi.org/10.1515/ntrev-2024-0100 CrossRef]

* Jabeen N, Sohail M, Mahmood A, Shah SA, Qalawlus AHM, Khaliq T. '''Nanocrystals loaded collagen/alginate-based injectable hydrogels: A promising biomaterial for bioavailability improvement of hydrophobic drugs''', ''J Drug Deliv Sci Technol'' 91:105291 (2024) [https://doi.org/10.1016/j.jddst.2023.105291 CrossRef]

===2023===
* Korwek Z, Czerkies M, Jaruszewicz-Błońska J, Prus W, Kosiuk I, Kochańczyk M, Lipniacki T. '''Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response''', ''Sci Signal'' 16(815):eabq1173 (2023) [https://pubmed.ncbi.nlm.nih.gov/38085817 PubMed] [https://doi.org/10.1126/scisignal.abq1173 CrossRef] | [{{SERVER}}/publications/Korwek-2023-SciSignal.pdf FullText] [https://doi.org/10.1101/2022.01.30.478391 bioRxiv]

* Grabowski F, Kochańczyk M, Korwek Z, Czerkies M, Prus W, Lipniacki T. '''Antagonism between viral infection and innate immunity at the single-cell level''', ''PLOS Pathog'' 19(9):e1011597 (2023) [https://pubmed.ncbi.nlm.nih.gov/37669278 PubMed] [https://doi.org/10.1371/journal.ppat.1011597 CrossRef] | [https://doi.org/10.1101/2022.11.18.517110 bioRxiv] [https://github.com/grfrederic/visavis Code] [https://doi.org/10.5281/zenodo.7428925 Data]

* Nałęcz-Jawecki P, Gagliardi PA, Kochańczyk M, Dessauges C, Pertz O, Lipniacki T. '''The MAPK/ERK channel capacity exceeds 6 bit/hour''', ''PLOS Comput Biol'' 19(5):e1011155 (2023) [https://pubmed.ncbi.nlm.nih.gov/37216347 PubMed] [https://doi.org/10.1371/journal.pcbi.1011155 CrossRef] | [https://doi.org/10.1101/2022.03.17.484713 bioRxiv] [https://github.com/pawelnalecz/pulsatile-information Code] [https://doi.org/10.5281/zenodo.7472959 Data]

* Grabowski F, Nałęcz-Jawecki P, Lipniacki T. '''Predictive power of non-identifiable models''', ''Sci Rep'' 13:11143 (2023) [https://doi.org/10.1038/s41598-023-37939-8 CrossRef] | [https://doi.org/10.1101/2023.04.07.536025 bioRxiv] [https://github.com/grfrederic/identifiability Code]

* Jaruszewicz-Błońska J, Kosiuk I, Prus W, Lipniacki T. '''A plausible identifiable model of the canonical NF-κB signaling pathway''', ''PLOS One'' 8(6):e0286416 (2023) [https://pubmed.ncbi.nlm.nih.gov/37267242 PubMed] [https://doi.org/10.1371/journal.pone.0286416 CrossRef] | [https://doi.org/10.1101/2022.06.09.495460 bioRxiv]

* Kurniawan T, Sahebdivani M, Zaremba D, Blonski S, Garstecki P, van Steijn V, Korczyk PM. '''Formation of droplets in microfluidic cross-junctions at small capillary numbers: Breakdown of the classical squeezing regime''', ''Chem Eng J'' 474:145601 (2023) [https://doi.org/10.1016/j.cej.2023.145601 CrossRef]

* Kazmierczak B, Sneyd J, Tsai J-C. '''Effect of buffers with multiple binding sites on calcium waves''', ''Bull Math Biol'' 85(1):10 (2023) [https://doi.org/10.1007/s11538-022-01109-0 CrossRef]

* Mahiout LA, Bessonov N, Kazmierczak B, Volpert V. '''Mathematical modeling of respiratory viral infection and applications to SARS-CoV-2 progression''', ''Math Meth Appl Sci'' 46(2):1740–1751 (2023) [https://doi.org/10.1002/mma.8606 CrossRef]

* Sønstevold L, Czerkies M, Escobedo-Cousin E, Blonski S, Vereshchagina E. '''Application of polymethylpentene, an oxygen permeable thermoplastic, for long-term on-a-chip cell culture and organ-on-a-chip devices''', ''Micromachines'' 14(3):532 (2023) [https://dx.doi.org/10.3390/mi14030532 CrossRef]

* Kosik-Kozioł A, Nakielski P, Rybak D, Frączek W, Rinoldi C, Lanzi M, , Grodzik M, Pierini F. '''Adhesive Antibacterial Moisturizing Nanostructured Skin Patch for Sustainable Development of Atopic Dermatitis Treatment in Human''', ''ACS Appl Mater Interfaces'' 16(25):32128-32146 (2024) [https://doi.org/10.1021/acsami.4c06662 CrossRef]

* Nakielski P, Rybak D, Jezierska-Woźniak K, Rinoldi C, Sinderewicz E, Staszkiewicz-Chodor J, Haghighat Bayan Mohammad A, Czelejewska W, Urbanek O, Kosik-Kozioł A, Barczewska M, Skomorowski M, Holak P, Lipiński S, Maksymowicz W, Pierini F. '''Minimally invasive intradiscal delivery of BM-MSCs via fibrous microscaffold carriers''', ''ACS Appl Mater Interfaces'' 15(50):58103–58118 (2023) [https://doi.org/10.1021/acsami.3c11710 CrossRef]

* Haghighat Bayan MA, Dias YJ, Rinoldi C, Nakielski P, Rybak D, Truong YB, Yarin AL, Pierini F. '''Near-infrared light activated core-shell electrospun nanofibers decorated with photoactive plasmonic nanoparticles for on-demand smart drug delivery applications''', ''J Polym Sci'' 61(7):521–533 (2023) [https://doi.org/10.1002/pol.20220747 CrossRef]

* Rinoldi C, Ziai Y, Zargarian SS, Nakielski P, Zembrzycki K, Haghighat Bayan MA, Zakrzewska A, Fiorelli R, Lanzi M, Kostrzewska-Księżyk A, Czajkowski R, Kublik E, Kaczmarek L, Pierini F. '''''In vivo'' chronic brain cortex signal recording based on a soft conductive hydrogel biointerface''', ''ACS Appl Mater Interfaces'' 15(5):6283–6296 (2023) [https://doi.org/10.1021/acsami.2c17025 CrossRef]

* Rybak D, Su Y-C, Li Y, Ding B, Lv X, Li Z, Yeh Y-C, Nakielski P, Rinoldi C, Pierini F, Dodda JM. '''Evolution of nanostructured skin patches towards multifunctional wearable platforms for biomedical applications''', ''Nanoscale'' 15:8044–8083 (2023) [https://doi.org/10.1039/D3NR00807J CrossRef]

* Ziai Y, Zargarian SS, Rinoldi C, Nakielski P, Sola A, Lanzi M, Truong YB, Pierini F. '''Conducting polymer-based nanostructured materials for brain–machine interfaces''', ''WIREs Nanomed Nanobiotechnol'' 15(5):e1895 (2023) [https://doi.org/10.1002/wnan.1895 CrossRef]

* Zakrzewska A, Zargarian SS, Rinoldi C, Gradys A, Jarząbek D, Zanoni M, Gualandi C, Lanzi M, Pierini F. '''Electrospun poly(vinyl alcohol)-based conductive semi-interpenetrating polymer network fibrous hydrogel: A toolbox for optimal cross-linking''', ''ACS Materials Au'' (2023) [https://doi.org/10.1021/acsmaterialsau.3c00025 CrossRef]

* Zembrzycki K, Pawłowska  S, Pierini F, Kowalewski TA. '''Brownian motion in optical tweezers, a comparison between MD simulations and experimental data in the ballistic regime''', ''Polymers'' 15(3):787 (2023) [https://doi.org/10.3390/polym15030787 CrossRef]

* Jain A, Ziai Y, Bochenek K, Manippady SR, Pierini F, Michalska M. '''Utilization of compressible hydrogels as electrolyte materials for supercapacitor applications''', ''RSC Adv'' 13:11503–11512 (2023) [https://doi.org/10.1039/D3RA00893B CrossRef]

* Peringath AR, Haghighat Bayan MA, Beg M, Jain A, Pierini F, Gadegaard N, Hogg R, Manjakkal L. '''Chemical synthesis of polyaniline and polythiophene electrodes with excellent performance in supercapacitors''', ''J Energy Storage'' 73A:108811 (2023) [https://doi.org/10.1016/j.est.2023.108811 CrossRef].

* Paradiso A, Volpi M, Rinoldi C, Celikkin N, Contessi Negrini N, Bilgen M, Dallera G, Pierini F, Costantini M, Święszkowski W, Farè S. '''''In vitro'' functional models for human liver diseases and drug screening: beyond animal testing''', ''Biomater Sci'' 11:2988–3015 (2023) [https://doi.org/10.1039/D1BM01872H CrossRef]

* Wang M, Du J, Li M, Pierini F, Li X, Yu J, Ding B. '''''In-situ'' forming double-crosslinked hydrogels with highly dispersed short fibers for treatment of irregular wounds''', ''Biomater Sci'' 11:2383–2394 (2023) [https://doi.org/10.1039/D2BM01891H CrossRef]

* Quadretti D, Marinelli M, Salatelli E, Pierini F, Zanelli A, Lanzi M. '''Effects of water/alcohol soluble cationic polythiophenes as cathode interlayers for eco-friendly solar cells''', ''Macromol Chem Phys'' 224(6):2200422 (2023) [https://doi.org/10.1002/macp.202200422 CrossRef]

* Haroon B, Sohail M, Minhas MU, Mahmood A, Hussain Z, Shah AS, Khan SM, Abbasi M, Kashif M. '''Nano-residronate loaded κ-carrageenan-based injectable hydrogels for bone tissue regeneration''', ''Int J Biol Macromol'' 251:126380 (2023) [https://doi.org/10.1016/j.ijbiomac.2023.126380 CrossRef]

* Emadi A, Lipniacki T, Levchenko A, Abdi A. '''Single-cell measurements and modeling and computation of decision-making errors in a molecular signaling system with two output molecules''', ''Biology'' 12:1461 (2023) [https://doi.org/10.3390/biology12121461 CrossRef]

===2022===
* Topolewski P, Zakrzewska KE, Walczak J, Nienałtowski K, Müller-Newen G, Singhand A, Komorowski M. '''Phenotypic variability, not noise, accounts for most of the cell-to-cell heterogeneity in IFN-γ and oncostatin M signaling responses''', ''Sci Signal'' (2022) [https://pubmed.ncbi.nlm.nih.gov/35167339 PubMed] [https://doi.org/10.1126/scisignal.abd9303 CrossRef]

* Zaremba D, Błoński S, Korczyk PM. '''Concentration on demand – a microfluidic system for precise adjustment of the content of single droplets''', ''Chem Eng J'' 430(3):132935 (2022) [https://doi.org/10.1016/j.cej.2021.132935 CrossRef] | [https://www.sciencedirect.com/science/article/pii/S1385894721045113/pdfft?md5=da0fd906b3e86fba9f62b68f21d8230f&pid=1-s2.0-S1385894721045113-main.pdf PDF]

* Czerkies M, Kochańczyk M, Korwek Z, Prus W, Lipniacki T. '''Respiratory syncytial virus protects bystander cells against influenza A virus infection by triggering secretion of type I and type III interferons''', ''J Virol'' 96:22 e01341-22 (2022) [https://pubmed.ncbi.nlm.nih.gov/36326278 PubMed] [https://doi.org/10.1128/jvi.01341-22 CrossRef] [https://doi.org/10.1101/2021.10.11.463877 bioRxiv]

* Grabowski F, Kochańczyk M, Lipniacki T. '''The spread of SARS-CoV-2 variant Omicron with the doubling time of 2.0–3.3 days can be explained by immune evasion''', ''Viruses'' 14(2):294 (2022) [https://pubmed.ncbi.nlm.nih.gov/35215887 PubMed] [https://doi.org/10.3390/v14020294 CrossRef] [https://dx.doi.org/10.1101/2021.12.08.21267494 medRxiv] | [https://www.mdpi.com/1999-4915/14/2/294/pdf PDF] [https://susy.mdpi.com/user/review/displayFile/23340271/tDGR6nk0?file=author-coverletter&report=16624478 Correspondence]

* Mines RC, Lipniacki T, Shen X. '''Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts''', ''PLOS Comput Biol'' 18(2):e1009811 (2022) [https://pubmed.ncbi.nlm.nih.gov/35143483 PubMed] [https://doi.org/10.1371/journal.pcbi.1009811 CrossRef]

* Adimy M, Chekroun A, Kazmierczak B. '''Traveling waves for reaction-diffusion PDE coupled to difference equation with nonlocal dispersal term and time delay''', ''Math Model Nath Phenom'' 17:2022021 (2022) [https://doi.org/10.1051/mmnp/2022021 CrossRef]

* Mahiout AL, Bessonov N, Kazmierczak B, Sadaka G, Volpert V. '''Infection spreading in cell culture as a reaction-diffusion wave''', ''ESAIM: Math Model Numer Anal'' 56(3):791–814 (2022) [https://doi.org/10.1051/m2an/2022019 CrossRef]

* Rabcuka J, Blonski S, Meli A, Sowemimo-Coker S, Zaremba D, Stephenson D, Dzieciatkowska M, Nerguizian D, Cardigan R, Korczyk PM, Smethurst PA, D'Alessandro A, Swietach P. '''Metabolic reprogramming under hypoxic storage preserves faster oxygen unloading from stored red blood cells''', ''Blood Adv'' 6(18):5415–5428 (2022) [https://pubmed.ncbi.nlm.nih.gov/35736672 PubMed] [http://dx.doi.org/10.1182/bloodadvances.2022007774 CrossRef]

* Banerjee M, Lipniacki T, d’Onofrio A, Volpert A. '''Epidemic model with strain-dependent transmission rate''', ''Commun Nonlinear Sci Numer Simul'' 114:106641 (2022) [https://doi.org/10.1016/j.cnsns.2022.106641 CrossRef]

* Zakrzewska A, Haghighat Bayan MA, Nakielski P, Petronella F, De Sio L, Pierini F. '''Nanotechnology transition roadmap toward multifunctional stimuli-responsive face masks''', ''ACS Appl Mater Interfaces'' 14(41):46123–46144 (2022) [https://pubmed.ncbi.nlm.nih.gov/36161869 PubMed] [https://doi.org/10.1021/acsami.2c10335 CrossRef]

* Marinelli M, Lanzi M, Pierini F, Ziai Y, Zanelli A, Quadretti D, Di Maria F, Salatelli E. '''Ionic push–pull polythiophenes: A further step towards eco-friendly BHJ organic solar cells''', ''Polymers'' 14(19):3965 (2022) [https://pubmed.ncbi.nlm.nih.gov/36235914 PubMed] [https://doi.org/10.3390/polym14193965 CrossRef]

* Ziai Y, Petronella F, Rinoldi C, Nakielski P, Zakrzewska A Kowalewski TA, Augustyniak W, Li X, Calogero A, Sabała I, Ding B, De Sio L, Pierini F. '''Chameleon-inspired multifunctional plasmonic nanoplatforms for biosensing applications''', ''NPG Asia Mater'' 14:18 (2022) [https://doi.org/10.1038/s41427-022-00365-9 CrossRef]

* de Amorim Filho EC, Moreira RA, Santos FAN '''The Euler characteristic and topological phase transitions in complex systems''', ''J Phys: Complexity'' 3:025003 (2022) [https://doi.org/10.1088/2632-072X/ac664c CrossRef]

* Nakielski P, Rinoldi C, Pruchniewski M, Pawłowska S, Gazińska M, Strojny B, Rybak D, Jezierska-Woźniak K, Urbanek O, Denis P, Sinderewicz E, Czelejewska W, Staszkiewicz-Chodor J, Grodzik M, Ziai Y, Barczewska M, Maksymowicz W, Pierini F. '''Laser-assisted fabrication of injectable nanofibrous cell carriers''', ''Small'' 18(2):e2104971 (2022) [https://pubmed.ncbi.nlm.nih.gov/34802179 PubMed] [https://doi.org/10.1002/smll.202104971 CrossRef]

* Liu Z, Moreira RA, Dujmović A, Liu H, Yang B, Poma AB, Nash MA. '''Mapping mechanostable pulling geometries of a therapeutic anticalin/CTLA-4 protein complex''', ''Nano Lett'' 22(1):179–187 (2022) [https://pubmed.ncbi.nlm.nih.gov/34918516 PubMed] [http://dx.doi.org/10.1021/acs.nanolett.1c03584 CrossRef]

* Liu Y, Wang Q, Liu X, Nakielski P, Pierini F, Li X, Yu J, Ding B. '''Highly adhesive, stretchable and breathable gelatin methacryloyl-based nanofibrous hydrogels for wound dressings''', ''ACS Appl Bio Mater'' 5(3):1047–1056 (2022) [https://pubmed.ncbi.nlm.nih.gov/35200003 PubMed] [https://doi.org/10.1021/acsabm.1c01087 CrossRef]

* Liguori A, Pandini S, Rinoldi C, Zaccheroni N, Pierini F, Focarete ML, Gualandi C. '''Thermo-active smart electrospun nanofibers''', ''Macromol Rapid Commun'' 2100694 (2022) [https://doi.org/10.1002/marc.202100694 CrossRef] | [https://onlinelibrary.wiley.com/doi/epdf/10.1002/marc.202100694 PDF]

* Glaeser JD, Bao X, Kaneda G, Avalos P, Behrens P, Salehi K, Da X, Chen A, Castaneda C, Nakielski P, Jiang W, Tawackoli W, Sheyn D. '''iPSC-neural crest derived cells embedded in 3D printable bio-ink promote cranial bone defect repair''', ''Sci Rep'' 12:18701 (2022) [https://pubmed.ncbi.nlm.nih.gov/36333414 PubMed] [https://doi.org/10.1038/s41598-022-22502-8 CrossRef]

* Ziai Y, Rinoldi C, Nakielski P, De Sio L, Pierini F. '''Smart plasmonic hydrogels based on gold and silver nanoparticles for biosensing application''', ''Curr Opin Biomed Eng'' 24:100413 (2022) [https://doi.org/10.1016/j.cobme.2022.100413 CrossRef]

* Mahiout LA, Kaźmierczak B, Volpert V. '''Viral infection spreading and mutation in cell culture''', ''Mathematics'' 10(2):256 (2022) [https://doi.org/10.3390/math10020256 CrossRef] | [https://www.mdpi.com/2227-7390/10/2/256/pdf PDF]

* La Monaca A, Girard G, Savoie S, Krachkovskiy S, Veillette R, Pierini F, Ashok V, Rosei F, Paolella A. '''Influence of TiIV substitution on the properties of a Li1.5Al0.5Ge1.5(PO4)3 nanofiber-based solid electrolyte''', ''Nanoscale'' 14:5094–5101 (2022) [https://pubmed.ncbi.nlm.nih.gov/35297444 PubMed] [https://doi.org/10.1039/D2NR00017B CrossRef]

* Cantor D, Wojtacki K. '''Effects of friction and spacing on the collaborative behavior of domino toppling''', ''Phys Rev Appl'' 17:064021 (2022) [https://dx.doi.org/10.1103/PhysRevApplied.17.064021 CrossRef]

* Komorowski M. '''Making sense of BMP signaling complexity''', ''Cell Syst'' 13(5):349–351 (2022) [https://pubmed.ncbi.nlm.nih.gov/35588697 PubMed] [https://doi.org/10.1016/j.cels.2022.04.002 CrossRef]

===2021===
* Błoński S, J Aureille, S Badawi, D Zaremba, L Pernet, A Grichine, S Fraboulet, PM Korczyk, P Recho, Ch Guilluy, ME Dolega. '''Direction of epithelial folding defines impact of mechanical forces on epithelial state''', ''Dev Cell'' 56:3222–3234 (2021) [https://pubmed.ncbi.nlm.nih.gov/34875225] [https://doi.org/10.1016/j.devcel.2021.11.008 CrossRef]

* M Koehler, A Ray, RA Moreira, B Juniku, AB Poma, D Alsteens. '''Molecular insights into receptor binding energetics and neutralization of SARS-CoV-2 variants''', ''Nat Commun'' 12(1):6977 (2021) [https://pubmed.ncbi.nlm.nih.gov/34848718 PubMed] [http://dx.doi.org/10.1038/s41467-021-27325-1 CrossRef]

* Kochańczyk M & Lipniacki T. '''Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectives''', ''Sci Rep'' 11:2425 (2021)  [https://pubmed.ncbi.nlm.nih.gov/33510274 PubMed] [https://doi.org/10.1038/s41598-021-81869-2 CrossRef] [https://www.medrxiv.org/content/10.1101/2020.06.27.20141747v2 medRxiv] | [https://www.nature.com/articles/s41598-021-81869-2.pdf PDF] [https://github.com/kochanczyk/covid19-pareto GitHub]

* Grabowski F, Preibisch G, Giziński S, Kochańczyk M, Lipniacki T. '''SARS-CoV-2 Variant of Concern 202012/01 has about twofold replicative advantage and acquires concerning mutations''', ''Viruses'' 13(3):392 (2021) [https://pubmed.ncbi.nlm.nih.gov/33804556 PubMed] [https://doi.org/10.3390/v13030392 CrossRef] [https://doi.org/10.1101/2020.12.28.20248906 medRxiv] | [https://www.mdpi.com/1999-4915/13/3/392/pdf PDF]

* Zaremba D, Błoński S, Korczyk PM. '''Integration of capillary–hydrodynamic logic circuitries for built-in control over multiple droplets in microfluidic networks''', ''Lab Chip'' 21:1771 (2021) [https://pubmed.ncbi.nlm.nih.gov/33710202 PubMed] [http://doi.org/10.1039/d0lc00900h CrossRef]

* Kaźmierczak B & Sneyd J. '''Speed of traveling waves for monotone reaction–diffusion systems as a function of diffusion coefficients''', ''Physica D: Nonlin Phenom'' 424:132940 (2021) [https://doi.org/10.1016/j.physd.2021.132940 CrossRef]

* Chen WC, Kaźmierczak B. '''Traveling waves in quadratic autocatalytic systems with complexing agent''', ''Discrete Contin Dyn Syst–Ser B'' 26(4):1827–1842 (2021) [http://dx.doi.org/10.3934/dcdsb.2020364 CrossRef]

* Nienałtowski K, Rigby RE, Walczak J, Zakrzewska KE, Głów E, Rehwinkel J, Komorowski M. '''Fractional response analysis reveals logarithmic cytokine responses in cellular populations''', ''Nat Commun'' 12:4175 (2021) [https://pubmed.ncbi.nlm.nih.gov/34234126 PubMed] [https://doi.org/10.1038/s41467-021-24449-2 CrossRef]

* Topolewski P & Komorowski M. '''Information-theoretic analyses of cellular strategies for achieving high signaling capacity — dynamics, cross-wiring and heterogeneity of cellular states''', ''Curr Opin Syst Biol'' 27:100352 (2021) [https://doi.org/10.1016/j.coisb.2021.06.003 CrossRef]

* Fiebelkow J, Guendel A, Guendel B, Mehwald N, Jetka T, Komorowski M, Waldherr S, Schaper F, Dittrich A. '''The tyrosine phosphatase SHP2 increases robustness and information transfer within IL-6-induced JAK/STAT signalling''', ''Cell Commun Signal'' 19:94 (2021) [https://pubmed.ncbi.nlm.nih.gov/34530865 PubMed] [https://doi.org/10.1186/s12964-021-00770-7 CrossRef]

* Poma A, Thu TTM, Tu LA, Hu C-K, Li MS. '''Nanomechanical stability of Aβ tetramers and fibril-like structures: Molecular dynamics simulations''', ''J Phys Chem B'' 125(28):7628−7637 (2021) [https://pubmed.ncbi.nlm.nih.gov/34253022 PubMed] [http://dx.doi.org/10.1021/acs.jpcb.1c02322 CrossRef]

* Piechocka IK, Keary S, Sosa-Costa A, Lau L, Mohan N, Stanisavljevic J, Borgman KJE, Lakadamyali M, Manzo C, Garcia-Parajo MF. '''Shear forces induce ICAM-1 nanoclustering onendothelial cells that impact on T-cell migration''', ''Biophys J'' 120:2644–2656 (2021) [https://pubmed.ncbi.nlm.nih.gov/34087211 PubMed] [https://doi.org/10.1016/j.bpj.2021.05.016 CrossRef]

* Rinoldi C, Lanzi M, Fiorelli R, Nakielski P, Zembrzycki K, Kowalewski T, Urbanek O, Grippo V, Jezierska-Woźniak  K, Maksymowicz W, Camposeo A, Bilewicz R, Pisignano D, Sanai N, Pierini F. '''Three-dimensional printable conductive semi-interpenetrating polymer network hydrogel for neural tissue applications''', ''Biomacromolecules'' 22(7):3084–3098 (2021) [https://pubmed.ncbi.nlm.nih.gov/34151565 PubMed] [https://doi.org/10.1021/acs.biomac.1c00524 CrossRef] | [https://pubs.acs.org/doi/pdf/10.1021/acs.biomac.1c00524 PDF]

* Rinoldi C, Zargarian SS, Nakielski P, Li X, Liguori A, Petronella G, Presutti D, Wang Q, Costantini M, De Sio L, Gualandi C, Ding B, Pierini F. '''Nanotechnology-assisted RNA delivery: From nucleic acid therapeutics to COVID-19 vaccines''', ''Small Meth'' 5(9):2100402 (2021) [https://pubmed.ncbi.nlm.nih.gov/34928055 PubMed] [https://doi.org/10.1002/smtd.202100402 CrossRef]

* Haghighat Bayan MA, Taromi FA, Lanzi  M, Pierini F. '''Enhanced efficiency in hollow core electrospun nanofiber-based organic solar cells''', ''Sci Rep'' 11:21144 (2021) [https://pubmed.ncbi.nlm.nih.gov/34707121 PubMed] [https://doi.org/10.1038/s41598-021-00580-4 CrossRef]

* Lanzi M & Pierini F. '''Efficient and thermally stable BHJ solar cells based on a soluble hydroxy-functionalized regioregular polydodecylthiophene''', ''React Funct Polym'' 158:104803 (2021) [https://doi.org/10.1016/j.reactfunctpolym.2020.104803 CrossRef]

* De Sio L, Ding B, Focsan M, Kogermann K, Pascoal-Faria P, Petronella F, Mitchell G, Zussmann E, Pierini F. '''Personalized reusable face masks with smart nano‐assisted destruction of pathogens for COVID‐19: A visionary road''', ''Chem Eur J'' 27(20):6112–6130 (2021) [https://pubmed.ncbi.nlm.nih.gov/33284500 PubMed] [https://doi.org/10.1002/chem.202004875 CrossRef]

* Lanzi M, Quadretti D, Marinelli M, Ziai Y, Salatelli E, Pierini F. '''Influence of the active layer structure on the photovoltaic performance of water-soluble polythiophene-based solar cells''', ''Polymers'' 13(10):1640 (2021) [https://pubmed.ncbi.nlm.nih.gov/34070205 PubMed] [https://doi.org/10.3390/polym13101640 CrossRef]

* Guglielmelli A, Pierini F, Tabiryan N, Umeton C, Bunning TJ, De Sio L. '''Thermoplasmonics with gold nanoparticles: A new weapon in modern optics and biomedicine''', ''Adv Photonics Res'' 2000198 (2021) [https://doi.org/10.1002/adpr.202000198 CrossRef]

* Marinelli M, Candini A, Monti F, Boschi A, Zangoli M, Salatelli E, Pierini F, Lanzi M, Zanelli A, Gazzano M, Di Maria F. '''Push–pull thiophene-based small molecules with donor and acceptor units of varying strength for photovoltaic application: Beyond P3HT and PCBM''', ''J Mater Chem C'' 9:11216–11228 (2021) [https://doi.org/10.1039/D1TC02641K CrossRef]

* Cidonio G, Costantini M, Pierini F, Scognamiglio C, Agarwal T, Barbetta A. '''3D printing of biphasic inks: Beyond single-scale architectural control''', ''J Mater Chem C'' (2021) 9:12489–12508 [http://dx.doi.org/10.1039/d1tc02117f CrossRef]

* Urbanek O, Wysocka A, Nakielski P, Pierini F, Jagielska E, Sabała I. '''Staphylococcus aureus specific electrospun wound dressings: Influence of immobilization technique on antibacterial efficiency of novel enzybiotic''', ''Pharmaceutics'' 13(5), 711 (2021) [https://pubmed.ncbi.nlm.nih.gov/34068117 PubMed] [https://doi.org/10.3390/pharmaceutics13050711 CrossRef]

* La Monac A, Girard G, Savoie S, Bertoni G, Krachkovskiy S, Vijh A, Pierini F, Rosei F, Paolella A. '''Synthesis of electrospun NASICON Li1.5Al0.5Ge1.5(PO4)3 solid electrolyte nanofibers by control of germanium hydrolysis''', ''J Electrochem Soc'' 168(11):110512 (2021) [https://doi.org/10.1149/1945-7111/ac334a CrossRef]

* Mahmood MI, Poma AB, Okazaki K. '''Optimizing Gō-MARTINI coarse-grained model for F-BAR protein on lipid membrane''', ''Front Mol Biosci'', 8:619381 [https://pubmed.ncbi.nlm.nih.gov/33693028 PubMed] [https://doi.org/10.3389/fmolb.2021.619381 CrossRef]

* Wencel A, Ciezkowska M, Wisniewska M, Zakrzewska KE, Pijanowska DG, Pluta KD. '''Effects of genetically modified human skin fibroblasts, stably overexpressing hepatocyte growth factor, on hepatic functions of cocultured C3A cells''', ''Biotechnol Bioeng'' 118(1):72–81 (2021) [https://pubmed.ncbi.nlm.nih.gov/32880912 PubMed] [https://doi.org/10.1002/bit.27551 CrossRef]

* Janczewska M, Szkop M, Pikus G, Kopyra K, Świątkowska A, Brygoła K, Karczmarczyk U, Walczak J, Żuk MT, Duszak J, Ciach T. '''PSMA targeted conjugates based on dextran''', ''Appl Radiat Isot'' 167:109439 (2021) [https://doi.org/10.1016/j.apradiso.2020.109439 CrossRef]

* Boopathi S, Poma AB, Garduño-Juárez R. '''An overview of several inhibitors for Alzheimer’s disease: Characterization and failure''', ''Int J Mol Sci'' 22:10798 (2021) [https://pubmed.ncbi.nlm.nih.gov/34639140 PubMed] [https://doi.org/10.3390/ijms221910798 CrossRef]

* Dębska-Vielhaber G, Miller I, Peeva V, Zuschratter W, Walczak J, Schreiber S, Petri S, Machts J, Vogt S, Szczepanowska J, Gellerich FN, Hermann A, Vielhaber S, Kunz WS '''Impairment of mitochondrial oxidative phosphorylation in skin fibroblasts of SALS and FALS patients is rescued by in vitro treatment with ROS scavengers''', ''Exp Neurol'' 339:113620 (2021) [https://pubmed.ncbi.nlm.nih.gov/33497646 PubMed] [http://dx.doi.org/10.1016/j.expneurol.2021.113620 CrossRef]

* Majkut M, Kwiecińska-Piróg J, Wszelaczyńska E, Pobereżny J, Gospodarek-Komkowska E, Wojtacki K, Barczak T. '''Antimicrobial activity of heat-treated Polish honeys''', ''Food Chem'' 343:128561 (2020) [https://pubmed.ncbi.nlm.nih.gov/33267984 PubMed] [https://dx.doi.org/10.1016/j.foodchem.2020.128561 CrossRef]

===2020===
* Kochańczyk M, Grabowski F, Lipniacki T. '''Super-spreading events initiated the exponential growth phase of COVID-19 with R0 higher than initially estimated''', ''R Soc Open Sci'' 7:200786 (2020) [https://pubmed.ncbi.nlm.nih.gov/33047040 PubMed] [https://doi.org/10.1098/rsos.200786 CrossRef] | [https://royalsocietypublishing.org/doi/pdf/10.1098/rsos.200786 PDF] [https://royalsocietypublishing.org/doi/suppl/10.1098/rsos.200786 SuppInfo-PDF] [https://royalsocietypublishing.org/action/downloadSupplement?doi=10.1098/rsos.200786&file=rsos200786_review_history.pdf Correspondence]

* Hat B, Jaruszewicz-Błońska J, Lipniacki T. '''Model-based optimization of combination protocols for irradiation-insensitive cancers''', ''Sci Rep'' 10:12652 (2020) [https://pubmed.ncbi.nlm.nih.gov/32724100 PubMed] [https://doi.org/10.1038/s41598-020-69380-6 CrossRef] | [https://www.nature.com/articles/s41598-020-69380-6.pdf PDF]

* Bialecki S, Nalecz-Jawecki P, Kazmierczak B, Lipniacki. '''Traveling and standing fronts on curved surfaces''', ''Physica D'' 401:132215 (2020) [https://doi.org/10.1016/j.physd.2019.132215 CrossRef]

* Kochańczyk M, Grabowski F, Lipniacki T. '''Dynamics of COVID-19 pandemic at constant and time-dependent contact rates''', ''Math Model Nat Phenom'' 15:28 (2020) [https://doi.org/10.1051/mmnp/2020011 CrossRef] | [https://www.mmnp-journal.org/articles/mmnp/pdf/forth/mmnp200048.pdf PDF] [http://pmbm.ippt.pan.pl/model/covid19/covid19_model.nb SuppCode]

* Chatterjee P, Glimm T, Kaźmierczak B. '''Mathematical modeling of chondrogenic pattern formation during limb development: Recent advances in continuous models''', ''Math Biosci'' 322:108319 (2020) [https://pubmed.ncbi.nlm.nih.gov/32001201 PubMed] [https://doi.org/10.1016/j.mbs.2020.108319 CrossRef]

* Nakielski P, Pawłowska S, Rinoldi C, Ziai Y, De Sio L, Urbanek O, Zembrzycki K, Pruchniewski M, Lanzi M, Salatelli E, Calogero A, Kowalewski TA, Yarin AL, Pierini F. '''Multifunctional platform based on electrospun nanofibers and plasmonic hydrogel: A smart nanostructured pillow for near-infrared light-driven biomedical applications''', ''ACS Appl Mater Interfaces'' 12(49):54328–54342 (2020) [https://pubmed.ncbi.nlm.nih.gov/33238095 PubMed] [https://dx.doi.org/10.1021/acsami.0c13266 CrossRef]

* Pierini F, Guglielmelli A, Urbanek O, Nakielski P, Pezzi L, Buda R, Lanzi M, Kowalewski TA, De Sio L. '''Thermoplasmonic-activated hydrogel based dynamic light attenuator''', ''Adv Opt Mater'' 2000324 (2020) [https://doi.org/10.1002/adom.202000324 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Pierini-2020-AdvOptMater-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Pierini-2020-AdvOptMater-SuppMovie.avi SuppMovie-AVI]

* Pawłowska S, Rinoldi C, Nakielski P, Ziai Y, Urbanek O, Li X, Kowalewski TA, Ding B, Pierini F. '''Ultraviolet light-assisted electrospinning of core–shell fully cross-linked P(NIPAAm-co-NIPMAAm) hydrogel-based nanofibers for thermally-induced drug delivery self-regulation''', ''Adv Mater Interfaces'' 2000247 (2020) [https://doi.org/10.1002/admi.202000247 CrossRef] | [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Pawlowska-2020-AdvMaterInterfaces-SuppMovie.mp4 SuppMovie-MP4] [https://onlinelibrary.wiley.com/doi/10.1002/admi.202070064 CoverPicture]

* Blonski S, Zaremba D, Jachimek M, Jakiela S, Wacławczyk T, Korczyk PM. '''Impact of inertia and channel angles on flow distribution in microfluidic junctions''', ''Microfluid Nanofluid'' 24:14 (2020) [https://doi.org/10.1007/s10404-020-2319-6 CrossRef]

* Sankaran A, Pawłowska S, Pierini F, Kowalewski, Yarin AL. '''Dynamics of electrospun hydrogel filaments in oscillatory microchannel flows: A theoretical and experimental approach''', ''Phys Fluids'' 32(7):072008 (2020) [https://doi.org/10.1063/5.0011005 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Sankaran_2020_PhysFluids.pdf PDF]

* Moreira RA, Chwastyk M, Baker JL, Guzman HV, Poma AB. '''Quantitative determination of mechanical stability in the novel coro-navirus spike protein''', ''Nanoscale'' 12:16409 (2020) [https://pubmed.ncbi.nlm.nih.gov/32725017 PubMed] [https://doi.org/10.1039/D0NR03969A CrossRef]

* Moreira RA, Guzman HV, Boopathi S, Baker JL, Poma AB. '''Characterization of structural and energetic differences between conformations of the SARS-CoV-2 spike protein''', ''Materials'' 13(23):5362 [https://pubmed.ncbi.nlm.nih.gov/33255977 PubMed] [https://doi.org/10.3390/ma13235362 CrossRef]

* Zalewska-Piątek B, Olszewski M, Lipniacki T, Błoński S, Wieczór M, Bruździak P, Skwarska A, Nowicki B, Nowicki S, Piątek R. '''A shear stress micromodel of urinary tract infection by the ''Escherichia coli'' producing Dr adhesin''', ''PLOS Pathog'' 16(1): e1008247 (2020) [https://www.ncbi.nlm.nih.gov/pubmed/31917805 PubMed] [https://doi.org/10.1371/journal.ppat.1008247 CrossRef]

* Białobrzeska W, Firganek D, Czerkies M, Lipniacki T, Skwarecka M, Dziąbowska K, Cebula Z, Malinowska N, Bigus D, Bięga E, Pyrć K, Pala K, Żołędowska S, Nidzworski D. '''Electrochemical immunosensors based on screen-printed gold and glassy carbon electrodes: Comparison of performance for respiratory syncytial virus detection''', ''Biosensors'' 10(11):175 (2020) [https://pubmed.ncbi.nlm.nih.gov/33202922 PubMed] [https://doi.org/10.3390/bios10110175 CrossRef]

* Volpert V, Banerjee M, d’Onofrio A, Lipniacki T, Petrovskii S, Tran VC. '''Coronavirus – Scientific insights and societal aspects''', ''Math Model Nat Phenom'' 15:E2 (2020) [https://doi.org/10.1051/mmnp/2020010 CrossRef]

* Bartali R, Gaixia Z , Tong X, Speranza G, Micheli V, Gottardi G, Fedrizzi M, Pierini F, Sun S, Laidani N, Tavares AC. '''Graphene oxide/reduced graphene oxide films as protective barriers on lead against differential aeration corrosion induced by water drops''', ''Nanoscale Adv'' 2:5421 (2020) [https://pubmed.ncbi.nlm.nih.gov/36132024 PubMed] [http://dx.doi.org/10.1039/d0na00212g CrossRef] | [https://pubs.rsc.org/en/content/articlepdf/2020/na/d0na00212g PDF] [http://www.rsc.org/suppdata/d0/na/d0na00212g/d0na00212g1.pdf SuppInfo-PDF]

* Wang L, Lv H, Liu L, Zhang Q, Nakielski P, Si Y, Cao J, Li X, Pierini F, Yu J, Ding B. '''Electrospun nanofiber reinforced three-dimensional chitosan matrices: Architectural, mechanical and biological properties''', ''J Colloid Interface Sci'' 565(1):416–425 (2020) [https://pubmed.ncbi.nlm.nih.gov/31982708 PubMed] [https://doi.org/10.1016/j.jcis.2020.01.016 CrossRef]

* Martinez M, Cooper CD, Poma AB, Guzman HV. '''Free energies of the disassembly of viral capsids from a multiscale molecular simulation approach''', ''J Chem Inf Model'' 60(2):974–981 (2020) [https://pubmed.ncbi.nlm.nih.gov/31873019 PubMed] [https://doi.org/10.1021/acs.jcim.9b00883 CrossRef]

* Boopathi S, Poma AB, Kolandaivel P. '''Novel 2019 coronavirus structure, mechanism of action, antiviral drug promises and rule out against its treatment''', ''J Biomol Struct Dyn'' (2020) [https://pubmed.ncbi.nlm.nih.gov/32306836 PubMed] [https://dx.doi.org/10.1080/07391102.2020.1758788 CrossRef]

* Ozen M, Lipniacki T, Levchenko A, Emamian ES, Abdi A. '''Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods''', ''Itegr Biol'' 12(5):122–138 (2020) [https://pubmed.ncbi.nlm.nih.gov/32424393 PubMed] [https://doi.org/10.1093/intbio/zyaa009 CrossRef] |  [https://academic.oup.com/ib/advance-article/doi/10.1093/intbio/zyaa009/5839897?guestAccessKey=e8e98b85-1c64-4cb5-ab89-21cb41aa3c0b PDF]

===2019===
* Korczyk PM, van Steijn V, Blonski S, Zaremba D, Beattie DA, Garstecki P. '''Accounting for corner flow unifies the understanding of droplet formation in microfluidic channels''', ''Nat Commun'' 10:2528 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/31175303 PubMed] [https://doi.org/10.1038/s41467-019-10505-5 CrossRef] | [{{SERVER}}/publications/Korczyk-2019-NatCommun.pdf PDF] [{{SERVER}}/publications/supplementary/Korczyk-2019-NatCommun-SuppInfo.pdf SuppInfo-PDF]

* Jetka T, Winarski T, Nienałtowski K, Błoński S, Komorowski M. '''Information-theoretic analysis of multivariate single-cell signaling responses''', ''PLOS Comput Biol'' 15(7):e1007132 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/31299056 PubMed] [https://doi.org/10.1371/journal.pcbi.1007132 CrossRef] | [https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007132&type=printable PDF] [https://doi.org/10.1371/journal.pcbi.1007132.s001 SuppInfo-PDF]

* Grabowski F, Czyż P, Kochańczyk , Lipniacki T. '''Limits to the rate of information transmission through the MAPK pathway''', ''J R Soc Interface'' 16(152):20180792 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30836891 PubMed] [http://dx.doi.org/10.1098/rsif.2018.0792 CrossRef] | [https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2018.0792 PDF] [{{SERVER}}/software/cce SuppCode]

* Bobrowski A, Lipniacki T. '''Robin-type boundary conditions in transition from reaction-diffusion equations in 3D domains to equations in 2D domains'''. ''J Differ Equ'' 268(1):239–271 (2019) [https://doi.org/10.1016/j.jde.2019.08.022 CrossRef]

* Komorowski M, Tawfik DS. '''The limited information capacity of cross-reactive sensors drives the evolutionary expansion of signaling''', ''Cell Syst'' 8(1):76–85.e6 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30660612 PubMed] [http://doi.org/10.1016/j.cels.2018.12.006 CrossRef]

* Billing U, Jetka T, Nortmann L, Wundrack N, Komorowski M, Waldherr S, Schaper F, Dittrich A. '''Robustness and information transfer within IL-6-induced JAK/STAT signalling''', ''Commun Biol'' 2:27 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30675525 PubMed] [http://doi.org/10.1038/s42003-018-0259-4 CrossRef]

* Zaremba D, Blonski S, Marijnissen MJ, Korczyk PM. '''Fixing the direction of droplets in a bifurcating microfluidic junction''', ''Microfluid Nanofluid'' 23:55 (2019) [https://doi.org/10.1007/s10404-019-2218-x CrossRef]

* Blonski S, Pregowska A, Michalek T, Szczepanski J. '''The use of Lempel-Ziv complexity to analyze turbulence and flow randomness based on velocity fluctuations''', ''Bull Polish Acad Sci–Tech Sci'' 67(5):957–962 [https://dx.doi.org/10.24425/bpasts.2019.130876 CrossRef]

* Senapati S, Poma AB, Cieplak M, Filipek S, Park P S-H. '''Differentiating between inactive and active states of rhodopsin by atomic force microscopy in native membranes''', ''Anal Chem'' 91(11):7226–7235 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/31074606 PubMed] [https://dx.doi.org/10.1021/acs.analchem.9b00546 CrossRef]

* Poma AB, Guzman HV, Li Ms, Theodorakis PE. '''Mechanical and thermodynamic properties of Aβ42, Aβ40, and α-synuclein fibrils: a coarse-grained method to complement experimental studies''', ''Beilstein J Nanotechnol'' 10:500–513 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/30873322 PubMed] [https://dx.doi.org/10.3762/bjnano.10.51 CrossRef]

* Enayatiab MS, Neisianya RE, Sajkiewicz P, Behzad T, Denis P, Pierini F. '''Effect of nanofiller incorporation on thermomechanical and toughness of poly(vinyl alcohol)-based electrospun nanofibrous bionanocomposites''', ''Theor Appl Fract Mech'' 99:44–50 (2019) [http://doi.org/10.1016/j.tafmec.2018.11.006 CrossRef]

* Lanzi M, Salatelli E, Marinelli M, Pierini F. '''Effect of photocrosslinking of D-A thiophene copolymers on the performance of single-material solar cells''', ''Macromol Chem Phys'' 1900433 (2019) [http://dx.doi.org/10.1002/macp.201900433 CrossRef]

* Pierini F, Lanzi M. '''Effect of electron–acceptor content on the efficiency of regioregular double-cable thiophene copolymers in single-material organic solar cells''', ''ACS Omega'' 4(22):19863–19874 (2019) [https://www.ncbi.nlm.nih.gov/pubmed/31788619 PubMed] [http://dx.doi.org/10.1021/acsomega.9b02790 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Pierini-2019-ACSOmega.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Pierini-2019-ACSOmega-SuppText.pdf SuppInfo-PDF]

* Nakielski P, Pierini F. '''Blood interactions with nano- and microfibers: recent advances, challenges and applications in nano- and microfibrous hemostatic agents''', ''Acta Biomater'' 84:63–76 (2019) [http://www.ncbi.nlm.nih.gov/pubmed/30471475 PubMed] [http://doi.org/10.1016/j.actbio.2018.11.029 CrossRef]

===2018===
* Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T. '''Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways''', ''Nat Commun'' 9:493 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/29402958 PubMed] [http://dx.doi.org/10.1038/s41467-017-02640-8 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Czerkies-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllSuppData.zip SuppData] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-AllMovies.zip SuppMovies] [http://pmbm.ippt.pan.pl/publications/supplementary/Czerkies-2018-NatCommun-ModelCode.zip SuppCode]

* Jetka T, Nienałtowski K, Filippi S, Stumpf MPH, Komorowski M. '''An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling''', ''Nat Commun'' 9:4591 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30389942 PubMed] [http://dx.doi.org/10.1038/s41467-018-07085-1 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Jetka-2018-NatCommun.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Jetka-2018-NatCommun-SuppInfo.pdf SuppInfo-PDF]

* Zuk PJ, Kochańczyk M, Lipniacki T. '''Sampling rare events in stochastic reaction–diffusion systems within trajectory looping''', ''Phys Rev E'' 98:022401 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30253540 PubMed] [http://doi.org/10.1103/PhysRevE.98.022401 CrossRef] | [http://pmbm.ippt.pan.pl/publications/Zuk-2018-PhysRevE-MS.pdf PDF-ms] [http://pmbm.ippt.pan.pl/software/looping Www]

* Kazmierczak B, Tsai J-C, Bialecki S. '''The propagation phenomenon of solutions of a parabolic problem on the sphere''', ''Math Model Meth Appl Sci'' 28(10):2001–2067 (2018) [http://doi.org/10.1142/S0218202518500483 CrossRef]

* Zaremba D, Błoński S, Jachimek M, Marijnissen MJ, Jakieła S, Korczyk PM. '''Investigations of modular microfluidic geometries for passive manipulations on droplets''', ''Bull Polish Acad Sci–Tech Sci'' 66(2):139–149 (2018) [http://doi.org/10.24425/119068 CrossRef]

* Skłodowska K, Dębski PR, Michalski JA, Korczyk PM, Dolata M, Zając M, Jakiela S. '''Simultaneous measurement of viscosity and optical density of bacterial growth and death in a microdroplet''', ''Micromachines'' 9(5):251 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30424184 PubMed] [http://dx.doi.org/10.3390/mi9050251 CrossRef]

* Debski PR, Sklodowska K, Michalski JA, Korczyk PM, Dolata M, Jakiela S. '''Continuous recirculation of microdroplets in a closed loop tailored for screening of bacteria cultures''', ''Micromachines'' 9(9):469 [http://www.ncbi.nlm.nih.gov/pubmed/30424402 PubMed] [http://doi.org/10.3390/mi9090469 CrossRef]

* Pierini F, Nakielski P, Urbanek O, Pawłowska S, Lanzi M, De Sio L, Kowalewski TA. '''Polymer-based nanomaterials for photothermal therapy: from light-responsive to multifunctional nanoplatforms for synergistically combined technologies''', ''Biomacromolecules'' 19(11):4147–4167 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30230317 PubMed] [http://dx.doi.org/10.1021/acs.biomac.8b01138 CrossRef]

* Pawłowska S, Kowalewski TA, Pierini F. '''Fibrous polymer nanomaterials for biomedical applications and their transport by fluids: an overview''', ''Soft Matter'' 14(42):8421–8444 (2018) [http://www.ncbi.nlm.nih.gov/pubmed/30339174 PubMed] [http://doi.org/10.1039/C8SM01269E CrossRef]

* Lanzi M, Salatelli E, Giorgini L, Marinelli M, Pierini F. '''Effect of the incorporation of an Ag nanoparticle interlayer on the photovoltaic performance of green bulk heterojunction water-soluble polythiophene solar cells''', ''Polymer'' 149:273–285 (2018) [http://doi.org/10.1016/j.polymer.2018.07.012 CrossRef]

* Enayati MS, Behzad T, Sajkiewicz PŁ, Bagheri R, Ghasemi-Mobarakeh L, Pierini F. '''Theoretical and experimental study of the stiffness of electrospun composites of poly(vinyl alcohol), cellulose nanofibers, and nanohydroxy apatite''', ''Cellulose'' 25(1):65–75 (2018) [http://doi.org/10.1007/s10570-017-1601-6 CrossRef]

* Urbanek O, Pierini F, Choińska E, Sajkiewicz P, Bil M, Święszkowski W. '''Effect of hydroxyapatite nanoparticles addition on structure properties of poly(L-lactide-co-glycolide) after gamma sterilization''', ''Polym Compos'' 39(4):1024–1031 (2018; e-pub 2016) [http://dx.doi.org/10.1002/pc.24028 CrossRef]

* Małolepszy A, Błonski S, Chrzanowska-Giżyńska J, Wojasiński M, Płocinski T, Stobinski L, Szymanski Z. '''Fluorescent carbon and graphene oxide nanoparticles synthesized by the laser ablation in liquid''',  ''Appl Phys A–Mater Sci Process'' 124:282 (2018) [http://doi.org/10.1007/s00339-018-1711-5 CrossRef]

===2017===

* Tudelska K, Markiewicz J, Kochańczyk M, Czerkies M, Prus W, Korwek Z, Abdi A, Błoński S, Kaźmierczak B, Lipniacki T. '''Information processing in the NF-κB pathway''', ''Sci Rep'' 7:15926 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/29162874 PubMed] [http://doi.org/10.1038/s41598-017-16166-y CrossRef] | [http://www.nature.com/articles/s41598-017-16166-y.pdf PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppDataset1.zip SuppCode-BNGL] [http://pmbm.ippt.pan.pl/publications/supplementary/Tudelska-2017-SciRep-SuppDataset2.zip SuppCode-Py]

* Jaruszewicz-Błońska J, Lipniacki T. '''Genetic toggle switch controlled by bacterial growth rate''', ''BMC Syst Biol'' 11:117 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/29197392 PubMed] [http://doi.org/10.1186/s12918-017-0483-4 CrossRef]

* Varga A, Ehrenreiter K, Aschenbrenner B, Kocieniewski P, Kochanczyk M, Lipniacki T, Baccarini M. '''RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα''', ''Sci Signal'' 10(469):eaai8482 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28270557 PubMed] [http://dx.doi.org/10.1126/scisignal.aai8482 CrossRef] | [{{SERVER}}/publications/supplementary/Varga-2017-SciSignal-SuppCode.bngl SuppCode-BioNetGen]

* Kochańczyk M, Kocieniewski P, Kozłowska E, Jaruszewicz-Błońska J, Sparta B, Pargett M, Albeck JG, Hlavacek WS, Lipniacki T. '''Relaxation oscillations and hierarchy of feedbacks in MAPK signaling''', ''Sci Rep'' 7:38244 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28045041 PubMed] [http://dx.doi.org/10.1038/srep38244 CrossRef] | [http://www.nature.com/articles/srep38244.pdf PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppInfo.pdf SuppInfo-PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgen-UPDATED.zip SuppCode-BNG] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeMatlabMatcont.zip SuppCode-MatCont] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeBionetgenNoisyEGFR.zip SuppCode-BNG-noisy] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-SuppCodeComsol.zip SuppCode-Comsol] [{{SERVER}}/publications/supplementary/Kochanczyk-2017-SciRep-Movie.mp4 SuppMovie]

* Kochańczyk M, Hlavacek WS, Lipniacki T. '''Spatkin: a simulator for rule-based modeling of biomolecular site dynamics on surfaces''', ''Bioinformatics'' (2017) 33(22):3667–3669 [http://www.ncbi.nlm.nih.gov/pubmed/29036531 PubMed] [http://doi.org/10.1093/bioinformatics/btx456 CrossRef] [http://pmbm.ippt.pan.pl/software/spatkin Www]

* Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A. '''Computation and measurement of cell decision making errors using single cell data''', ''PLOS Comput Biol'' 13(4):e1005436 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28379950 PubMed] [http://dx.doi.org/10.1371/journal.pcbi.1005436 CrossRef]

* Białecki S, Kaźmierczak B, Lipniacki T. '''Polarization of concave domains by traveling wave pinning''', ''PLOS One'' 12:e0190372 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/29284045 PubMed] [http://dx.doi.org/10.1371/journal.pone.0190372 CrossRef]

* Bialecki S, Kaźmierczak B, Nowicka D, Tsai J-C. '''Regularity of solutions to a reaction–diffusion equation on the sphere: the Legendre series approach''', ''Math Meth Appl Sci'' 40(14):5349–5369 (2017) [http://dx.doi.org/10.1002/mma.4390 CrossRef]

* Adimy M, Chekroun A, Kaźmierczak B. '''Traveling waves in a coupled reaction–diffusion and difference model of hematopoiesis''', ''J Differ Equ'' 262(7):4085–4128 (2017) [http://dx.doi.org/10.1016/j.jde.2016.12.009 CrossRef]

* Bobrowski A, Kaźmierczak B, Kunze M. '''An averaging principle for fast diffusions in domains separated by semi-permeable membranes''', ''Math Model Meth Appl Sci'' 27(4):663–706 (2017) [http://dx.doi.org/10.1142/S0218202517500130 CrossRef] [http://arxiv.org/abs/1603.00494 arXiv]

* Martincuks A, Andryka K, Küster A, Schmitz-Van de Leur H, Komorowski M, Müller-Newen G. '''Nuclear translocation of STAT3 and NF-κB are independent of each other but NF-κB supports expression and activation of STAT3''', ''Cell Signal'' 32:36–47 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28089769 PubMed] [http://dx.doi.org/10.1016/j.cellsig.2017.01.006 CrossRef]

* Pawłowska S, Nakielski P, Pierini F, Piechocka IK, Zembrzycki K, Kowalewski TA. '''Lateral migration of electrospun hydrogel nanofilaments in an oscillatory flow''', ''PLOS One'' 12(11):e0187815 [http://www.ncbi.nlm.nih.gov/pubmed/29141043 PubMed] [http://doi.org/10.1371/journal.pone.0187815 CrossRef]

* Pierini F, Lanzi M, Nakielski P, Pawłowska S, Urbanek O, Zembrzycki K, Kowalewski TA. '''Single-material organic solar cells based on electrospun fullerene-grafted polythiophene nanofibers''', ''Macromolecules'' 50(13):4972–81 (2017) [http://dx.doi.org/10.1021/acs.macromol.7b00857 CrossRef]

* Pierini F, Lanzi M, Nakielski P, Kowalewski TA. '''Electrospun polyaniline-based composite nanofibers: Tuning the electrical conductivity by tailoring the structure of thiol-protected metal nanoparticles''', ''J Nanomater'' 2017:6142140 (2017) [http://doi.org/10.1155/2017/6142140 CrossRef]

* Urbanek O, Sajkiewicz P, Pierini F. '''The effect of polarity in the electrospinning process on PCL/chitosan nanofibres' structure, properties and efficiency of surface modification''', ''Polymer'' 124:168–75 (2017) [http://dx.doi.org/10.1016/j.polymer.2017.07.064 CrossRef]

* Urbanek O, Sajkiewicz P, Pierini F, Czerkies M, Kołbuk D. '''Structure and properties of polycaprolactone/chitosan nonwovens tailored by solvent systems''', ''Biomed Mater'' 12:015020 (2017) [http://www.ncbi.nlm.nih.gov/pubmed/28157717 PubMed] [http://dx.doi.org/10.1088/1748-605X/aa5647 CrossRef]

* Lanzi M, Salatelli E, Di-Nicola FP, Zuppiroli L, Pierini F. '''A new photocrosslinkable oligothiophene for organic solar cells with enhanced stability''', ''Mater Chem Phys'' 186:98–107 (2017) [http://dx.doi.org/10.1016/j.matchemphys.2016.10.034 CrossRef]

* Lanzi M, Salatelli E, Giorgini L, Mucci A, Pierini F, Di-Nicola F. '''Water-soluble polythiophenes as efficient charge-transport layers for the improvement of photovoltaic performance in bulk heterojunction polymeric solar cells''', ''Eur Polymer J'' 97:378–388 (2017) [http://doi.org/10.1016/j.eurpolymj.2017.10.032 CrossRef]

===2016===

* Hat B, Kochańczyk M, Bogdał MN, Lipniacki T. '''Feedbacks, bifurcations, and cell fate decision-making in the p53 system''', ''PLOS Comput Biol'' 12(2):e1004787 (2016) [http://www.ncbi.nlm.nih.gov/pubmed/26928575 PubMed] [http://dx.doi.org/10.1371/journal.pcbi.1004787 CrossRef] | [{{SERVER}}/publications/Hat-2016-PLOSComputBiol.pdf PDF] [{{SERVER}}/publications/supplementary/Hat-2016-PLOSComputBiol-SuppText.pdf SuppText] [{{SERVER}}/publications/supplementary/Hat-2016-PLOSComputBiol-SuppFigures.zip SuppFigs] [{{SERVER}}/publications/supplementary/Hat-2016-PLOSComputBiol-SuppCode.zip SuppCode]

* Korwek Z, Tudelska K, Nałęcz-Jawecki P, Czerkies M, Prus W, Markiewicz J, Kochańczyk M, Lipniacki T. '''Importins promote high-frequency NF-κB oscillations increasing information channel capacity''', ''Biol Direct'' 11:61 (2016) [http://www.ncbi.nlm.nih.gov/pubmed/27835978 PubMed] [http://dx.doi.org/10.1186/s13062-016-0164-z CrossRef] | [{{SERVER}}/publications/Korwek-2016-BiolDirect.pdf PDF] [{{SERVER}}/publications/supplementary/Korwek-2016-BiolDirect-Fig1d-HiRes.pdf Scheme-PDF] [{{SERVER}}/publications/supplementary/Korwek-2016-BiolDirect-AddFile1-ModelDescription.pdf SuppModelInfo-PDF] [{{SERVER}}/publications/supplementary/Korwek-2016-BiolDirect-AddFile2-NFkBImportinsModel.bngl SuppModelCode-BNGL] [{{SERVER}}/publications/supplementary/Korwek-2016-BiolDirect-AddFile3-SuppFigs-S1-to-S7.pdf SuppFigs-PDF] [{{SERVER}}/publications/supplementary/Korwek-2016-BiolDirect-AddFiles4567-SuppImages.zip SuppImages-ZIP]

* Chatterjee P, Kaźmierczak B. '''Eigenfunction approach to transient patterns in a model of chemotaxis''', ''Math Model Nat Phenom'' 11(2):44–62 (2016) [http://dx.doi.org/10.1051/mmnp/201611204 CrossRef]

* Pierini F, Zembrzycki K, Nakielski P, Pawłowska S, Kowalewski TA. '''Atomic force microscopy combined with optical tweezers (AFM/OT)''', ''Meas Sci Technol'' 27:025904 (2016) [http://dx.doi.org/10.1088/0957-0233/27/2/025904 CrossRef]

* Pierini F, Lanzi M, Nakielski P, Pawłowska S, Zembrzycki K, Kowalewski TA. '''Electrospun poly(3-hexylthiophene)/poly(ethylene oxide)/graphene oxide composite nanofibers: effects of graphene oxide reduction''', ''Polym Adv Technol'' 27(11):1465–1475 (2016) [http://dx.doi.org/10.1002/pat.3816 CrossRef]

* Adamowicz J, Pokrywczyńska M, Tworkiewicz J, Kowalczyk T, van Breda SV, Tyloch D, Kloskowski T, Bodnar M, Skopinska-Wisniewska J, Marszałek A, Frontczak-Baniewicz M, Kowalewski TA, Drewa T. '''New amniotic membrane based biocomposite for future application in reconstructive urology''', ''PLOS One'' 11(1):e0146012 (2016) [http://www.ncbi.nlm.nih.gov/pubmed/26766636 PubMed] [http://dx.doi.org/10.1371/journal.pone.0146012 CrossRef]

===2015===

* Szymańska P, Martin KR, MacKeigan JP, Hlavacek WS, Lipniacki T. '''Computational analysis of an autophagy/translation switch based on mutual inhibition of mTORC1 and ULK1''', ''PLOS One'' 10(3):e0116550 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/25761126 PubMed] [http://dx.doi.org/10.1371/journal.pone.0116550 CrossRef] | [{{SERVER}}/publications/Szymanska-2015-PLOSOne.pdf PDF] [{{SERVER}}/publications/supplementary/Szymanska-2015-PLOSOne-SuppFileS1.bngl.txt supp-BNGL] [{{SERVER}}/publications/supplementary/Szymanska-2015-PLOSOne-SuppFileS2.pdf supp-PDF]

* Nałęcz-Jawecki P, Szymańska P, Kochańczyk M, Miękisz J, Lipniacki T. ''' Effective reaction rates for diffusion-limited reaction cycles''', ''J Chem Phys'' 143(21):215102 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/26646890 PubMed] [http://dx.doi.org/10.1063/1.4936131 CrossRef] | [{{SERVER}}/publications/Nalecz-Jawecki-2015-JChemPhys-MS.pdf PDF-ms]

* Szymańska P, Kochańczyk M, Miększ J, Lipniacki T. '''Effective reaction rates in diffusion-limited phosphorylation–dephosphorylation cycles''', ''Phys Rev E'' 91:022702 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/25768526 PubMed] [http://dx.doi.org/10.1103/PhysRevE.91.022702 CrossRef] | [{{SERVER}}/publications/Szymanska-2015-PhysRevE-MS.pdf PDF-ms]

* Nienałtowski K, Włodarczyk M, Lipniacki T, Komorowski M. '''Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics''', ''BMC Syst Biol'' 9:65 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/26415494 PubMed] [http://dx.doi.org/10.1186/s12918-015-0205-8 CrossRef] | [https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0205-8 PDF] [https://static-content.springer.com/esm/art%3A10.1186%2Fs12918-015-0205-8/MediaObjects/12918_2015_205_MOESM1_ESM.pdf Supp-PDF] [http://sysbiosig.org/?wpdmdl=1094 Supp-Code]

* Kellogg RA, Tian C, Lipniacki T, Quake SR, Tay S. '''Digital signaling decouples activation probability and population heterogeneity''', ''eLife'' 4:e08931 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/26488364 PubMed] [http://dx.doi.org/10.7554/eLife.08931 CrossRef] | [{{SERVER}}/publications/Kellog-2015-eLife.pdf PDF]

* Białecki S, Kaźmierczak B, Tsai J-C. '''Stationary waves on the sphere''', ''SIAM J Appl Math'' 75(4):1761–1788 (2015) [http://dx.doi.org/10.1137/140999384 CrossRef]

* Szymańska P, Gritti N, Keegstra J, Soltani M, Munsky B. '''Using noise to control heterogeneity of isogenic populations in homogenous environments''', ''Phys Biol'' 12:045003 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/26086389 PubMed] [http://dx.doi.org/10.1088/1478-3975/12/4/045003 CrossRef]

* Wronowska W, Charzyńska A, Nienałtowski K, Gambin A. '''Computational modeling of sphingolipid metabolism''', ''BMC Syst Biol'' 9:47 (2015) [https://www.ncbi.nlm.nih.gov/pubmed/26275400 PubMed] [http://dx.doi.org/10.1186/s12918-015-0176-9 CrossRef]

* Aliper AM, Csoka AB, Buzdin A, Jetka T, Roumiantsev S, Moskalev A, Zhavoronkov A. '''Signaling pathway activation drift during aging: Hutchinson-Gilford Progeria Syndrome fibroblasts are comparable to normal middle-age and old-age cells''', ''Aging'' 7(1):26–37 [http://www.ncbi.nlm.nih.gov/pubmed/25587796 PubMed]

* Korczyk PM, Dolega ME, Jakiela S, Jankowski P, Makulska S, Garstecki P. '''Scaling up the throughput of synthesis and extraction in droplet microfluidic reactors''', ''J Flow Chem'' 5(2):110–118 (2015) [http://dx.doi.org/10.1556/jfc-d-14-00038 CrossRef]

* Samborski A, Jankowski P, Węgrzyn J, Michalski JA, Pawłowska S, Jakieła S, Garstecki P. '''Blood diagnostics using sedimentation to extract plasma on a fully integrated point-of-care microfluidic system''', ''Eng Life Sci'' 15(3):333–339 (2015) [http://dx.doi.org/10.1002/elsc.201400077 CrossRef]

* Nakielski P, Kowalczyk T, Zembrzycki K, Kowalewski TA. '''Experimental and numerical evaluation of drug release from nanofiber mats to brain tissue''', ''J Biomed Mater Res B Appl Biomater'' 103(2):282–291 (2015; e-pub 2014) [http://www.ncbi.nlm.nih.gov/pubmed/24819674 PubMed] [http://dx.doi.org/10.1002/jbm.b.33197 CrossRef]

* Nakielski P, Pawłowska S, Pierini F, Liwińska W, Hejduk P, Zembrzycki K, Zabost E, Kowalewski TA. '''Hydrogel nanofilaments via core-shell electrospinning''', ''PLOS One'' 10(6):e0129816 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/26091487 PubMed] [http://dx.doi.org/10.1371/journal.pone.0129816 CrossRef] [http://fluid.ippt.pan.pl/pnakiel/PLOS/ Supp] [http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133458 Correction]

* Noszczyk BH, Kowalczyk T, Łyżniak M, Zembrzycki K, Mikułowski G, Wysocki J, Kawiak J, Pojda Z. '''Biocompatibility of electrospun human albumin: A pilot study''', ''Biofabrication'' 7(1):015011 (2015) [http://www.ncbi.nlm.nih.gov/pubmed/25727172 PubMed] [http://dx.doi.org/10.1088/1758-5090/7/1/015011 CrossRef]

* Sielamowicz I, Czech A, Kowalewski TA. '''Comparative analysis of empirical descriptions of eccentric flow in silo model by the linear and nonlinear regressions'''. ''Powder Technol'' 270:393–410 (2015) [http://dx.doi.org/10.1016/j.powtec.2014.10.007 CrossRef]

* Pierini F, Lanzi M, Lesci IG, Rover N. '''Comparison between inorganic geomimetic chrysotile and multiwalled carbon nanotubes in the preparation of one-dimensional conducting polymer nanocomposites''', ''Fiber Polym'' 16(2):426–433 (2015) [http://dx.doi.org/10.1007/s12221-015-0426-x CrossRef]

* Jarecki L, Błoński S, Zachara Z. '''Modeling of pneumatic melt drawing of poly-L-lactide fibers in the Laval nozzle''', ''Ind Eng Chem Res'' (2015) 54(43):10796–10810 [http://dx.doi.org/10.1021/acs.iecr.5b02375 CrossRef]

* Chrzanowska J, Hoffman J, Małolepszy A, Mazurkiewicz M, Kowalewski TA, Szymanski Z, Stobinski L. '''Synthesis of carbon nanotubes by the laser ablation method: Effect of laser wavelength''', ''Phys Status Solidi B'' 252(8):1860–1867 (2015) [http://dx.doi.org/10.1002/pssb.201451614 CrossRef]

* Oliferuk W, Maj M, Zembrzycki K. '''Determination of the energy storage rate distribution in the area of strain localization using infrared and visible imaging''', ''Exp Mech'' 55:753–760 (2015) [http://dx.doi.org/10.1007/s11340-013-9819-1 CrossRef]

===2014===

* Jaruszewicz J, Kimmel M, Lipniacki T. '''Stability of bacterial toggle switches is enhanced by cell-cycle lengthening by several orders of magnitude''', ''Phys Rev E'' 89(2):022710 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25353512 PubMed] [http://dx.doi.org/10.1103/PhysRevE.89.022710 CrossRef] | [{{SERVER}}/publications/Jaruszewicz-2014-PhysRevE-MS.pdf PDF-ms]

* Bertolusso R, Tian B, Zhao Y, Vergara L, Sabree A, Iwanaszko M, Lipniacki T, Brasier AR, Kimmel M. '''Dynamic cross talk model of the epithelial innate immune response to double-stranded RNA stimulation: Coordinated dynamics emerging from cell-level noise''', ''PLOS One'' 9(4):e93396 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24710104 PubMed] [http://dx.doi.org/10.1371/journal.pone.0093396 CrossRef] | [http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0093396&representation=PDF PDF] [{{SERVER}}/publications/supplementary/Bertolusso-2014-PLOSOne-Supp.pdf Supp-PDF]

* Jetka T, Charzynska A, Gambin A, Stumpf MPH, Komorowski M. '''StochDecomp—Matlab package for noise decomposition in stochastic biochemical systems''', ''Bioinformatics'' 30(1):137–138 (2014; e-pub 2013) [http://www.ncbi.nlm.nih.gov/pubmed/24191070 PubMed] [http://dx.doi.org/10.1093/bioinformatics/btt631 CrossRef] | [{{SERVER}}/publications/Jetka-2014-Bioinformatics-MS.pdf PDF-ms] [http://sourceforge.net/p/stochdecomp/ Code-Matlab]

* Cheng FHC, Aguda BD, Tsai J-C, Kochańczyk M, Lin JMJ, Chen GCW, Lai H-C, Nephew KP, Hwang T-W, Chan MWY. '''A mathematical model of bimodal epigenetic control of miR-193a in ovarian cancer stem cells''', ''PLOS One'' 9(12):e116050 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25545504 PubMed] [http://dx.doi.org/10.1371/journal.pone.0116050 CrossRef] | [http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0116050&representation=PDF PDF]

* Pokrywczyńska M, Jundziłł A, Adamowicz J, Kowalczyk T, Warda K, Rasmus M, Buchholz Ł, Krzyżanowska S, Nakielski P, Chmielewski T, Bodnar M, Marszałek A, Dębski R, Frontczak-Baniewicz M, Mikułowski G, Nowacki M, Kowalewski TA, Drewa T. '''Is the poly(L-lactide-co-caprolactone) nanofibrous membrane suitable for urinary bladder regeneration?''' ''PLOS One'' 9(8):105295 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25162451 PubMed] [http://dx.doi.org/10.1371/journal.pone.0105295 CrossRef] | [{{SERVER}}/publications/Pokrywczynska-2014-PLOSOne.pdf PDF]

* Kloskowski T, Jundziłł A, Kowalczyk T, Nowacki M, Bodnar M, Marszałek A, Pokrywczyńska M, Frontczak-Baniewicz M, Kowalewski TA, Chłosta P, Drewa T. '''Ureter regeneration—the proper scaffold has to be defined''', ''PLOS One'' 9(8):106023 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25162415 PubMed] [http://dx.doi.org/10.1371/journal.pone.0106023 CrossRef] | [{{SERVER}}/publications/Kloskowski-2014-PLOSOne.pdf PDF]

* Gomez-Sanchez C, Kowalczyk T, Ruiz De Eguino G, Lopez-Arraiza A, Infante A, Rodriguez CI, Kowalewski TA, Sarrionandia M, Aurrekoetxea J. '''Electrospinning of poly(lactic acid)/polyhedral oligomeric silsesquioxane nanocomposites and their potential in chondrogenic tissue regeneration''', ''J Biomater Sci–Polym Ed'' 25(8):802–825 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24754323 PubMed] [http://dx.doi.org/10.1080/09205063.2014.910151 CrossRef]

* Rafalowska J, Sulejczak D, Chrapusta SJ, Gadamski R, Taraszewska A, Nakielski P, Kowalczyk T, Dziewulska D. '''Non-woven nanofiber mats – a new perspective for experimental studies of the central nervous system?''' ''Folia Neuropathol'' 52(4): 407-416 (2014) [https://www.ncbi.nlm.nih.gov/pubmed/25574745 PubMed] [http://dx.doi.org/10.5114/fn.2014.47841 CrossRef] | [{{SERVER}}/publications/Rafalowska-2014-FoliaNeuropathol.pdf PDF]

* Sulejczak D, Andrychowski J, Kowalczyk T, Nakielski P, Frontczak-Baniewicz M, Kowalewski TA. '''Electrospun nanofiber mat as a protector against the consequences of brain injury''', ''Folia Neuropathol'' 52(1):56–69 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24729343 PubMed] [http://dx.doi.org/10.5114/fn.2014.41744 CrossRef] | [{{SERVER}}/publications/Sulejczak-2014-FoliaNeuropathol.pdf PDF]

* Stasiek J, Jewartowski M, Kowalewski TA. '''The use of liquid crystal thermography in selected technical and medical applications—Recent development''', ''J Crystalliz Process Technol'' 4(1):42466 (2014) [http://dx.doi.org/10.4236/jcpt.2014.41007 CrossRef] | [http://www.scirp.org/journal/PaperDownload.aspx?paperID=42466 PDF]

* Blim A, Jarecki L, Błoński S. '''Modeling of pneumatic melt drawing of polypropylene super-thin fibers in the Laval nozzle''', ''Bull Pol Acad Sci–Tech Sci'' 62(1):43–54 (2014) [http://dx.doi.org/10.2478/bpasts-2014-0005 CrossRef] | [{{SERVER}}/publications/Blim-2014-BullPolAcadSciTechSci.pdf PDF]

* Korwek Z, Alster O. Rola szlaku indukowanego uszkodzeniami DNA w apoptozie i starzeniu komórkowym '''[The role of the DNA damage response in apoptosis and cell senescence]''', ''Postepy Biochem'' 60(2):248-62 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25134360 PubMed] | [{{SERVER}}/publications/Korwek-2014-PostepyBiochem.pdf PDF]

* Alster O, Korwek Z. Znaczniki starzenia komórkowego '''[Markers of cellular senescence]''', ''Postepy Biochem'' 60(2):138-46 (2014) [http://www.ncbi.nlm.nih.gov/pubmed/25134350 PubMed] | [{{SERVER}}/publications/Alster-2014-PostepyBiochem.pdf PDF]

===2013===

* Pękalski J, Zuk PJ, Kochańczyk M, Junkin M, Kellog R, Tay S, Lipniacki T. '''Spontaneous NF-κB activation by autocrine TNFα signaling: A computational analysis''', ''PLOS One'' 8(11):e78887 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/24324544 PubMed] [http://dx.doi.org/10.1371/journal.pone.0078887 CrossRef] | [http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0078887&representation=PDF PDF] [{{SERVER}}/publications/supplementary/Pekalski-2013-PLOSOne-SuppText-S1.pdf Supp-PDF] [{{SERVER}}/publications/supplementary/Pekalski-2013-PLOSOne-SuppMaterial-S1.zip Code-Matlab] [{{SERVER}}/publications/supplementary/Pekalski-2013-PLOSOne-SuppMaterial-S2.zip Code-BioNetGen] [{{SERVER}}/publications/supplementary/Pekalski-2013-PLOSOne-SuppMaterial-S3.zip Code-MatCont]

* Bogdał MN, Hat B, Kochańczyk M, Lipniacki T. '''Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate''', ''BMC Syst Biol'' 7:67 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23883471 PubMed] [http://dx.doi.org/10.1186/1752-0509-7-67 CrossRef] | [http://www.biomedcentral.com/content/pdf/1752-0509-7-67.pdf PDF] [{{SERVER}}/publications/supplementary/Bogdal-2013-BMCSystBiol-SourceCode.zip Code-Matlab]

* Kochańczyk M, Jaruszewicz J, Lipniacki T. '''Stochastic transitions in a bistable reaction system on the membrane''', ''J R Soc Interface'' 10(84):20130151 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23635492 PubMed] [http://dx.doi.org/10.1098/rsif.2013.0151 CrossRef] | [http://rsif.royalsocietypublishing.org/content/10/84/20130151.full.pdf PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2013-JRSocInterface-Supp.pdf Supp-PDF] [{{SERVER}}/publications/supplementary/Kochanczyk-2013-JRSocInterface-Movies.zip Supp-movies]

* Kocieniewski P, Lipniacki T. '''MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response''', ''Phys Biol'' 10(3):035006 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23735655 PubMed] [http://dx.doi.org/10.1088/1478-3975/10/3/035006 CrossRef] | [{{SERVER}}/publications/Kocieniewski-2013-PhysBiol-MS.pdf PDF-ms] [{{SERVER}}/publications/supplementary/Kocieniewski-2013-PhysBiol-SourceCode.zip Code-BioNetGen]

* Jaruszewicz J, Lipniacki T. '''Toggle switch: Noise determines the winning gene''', ''Phys Biol'' 10(3):035007 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23735670 PubMed] [http://dx.doi.org/10.1088/1478-3975/10/3/035007 CrossRef] | [{{SERVER}}/publications/Jaruszewicz-2013-PhysBiol-MS.pdf PDF-ms]

* Jaruszewicz J, Zuk PJ, Lipniacki T. '''Type of noise defines global attractors in bistable molecular regulatory systems''', ''J Theor Biol'' 317:140–151 (2013; e-pub 2012) [http://www.ncbi.nlm.nih.gov/pubmed/23063780 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2012.10.004 CrossRef] | [{{SERVER}}/publications/Jaruszewicz-2013-JTheorBiol-MS.pdf PDF-ms]

* Crooks E, Kazmierczak B, Lipniacki T. '''A spatially extended model of kinase-receptor interaction''', ''SIAM J Appl Math'' 73(1):374–400 (2013) [http://dx.doi.org/10.1137/110860926 CrossRef]

* Szopa P, Dyzma M, Kaźmierczak B. '''Membrane associated complexes in calcium dynamics modelling''', ''Phys Biol'' 10(3):035004 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23735591 PubMed] [http://dx.doi.org/10.1088/1478-3975/10/3/035004 CrossRef]

* Kaźmierczak B, Peradzyński Z. '''Calcium waves with mechano-chemical couplings''', ''Math Biosci Eng'' 10(3):743-759 (2013) [http://dx.doi.org/10.3934/mbe.2013.10.743 CrossRef]

* Piechór K. '''Calcium waves in thin domains of visco-elastic cells''', ''Math Model Nat Phenom'' 8(3):206-226 (2013) [http://dx.doi.org/10.1051/mmnp/20138313 CrossRef]

* Finkenstädt BF, Woodcock DJ, Komorowski M, Harper CV, Davis JRE, White MRH, Rand DA. '''Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: an application to single cell data''', ''Ann Appl Stat'' 7(4):1837-2457 (2013) [http://dx.doi.org/10.1214/13-AOAS669 CrossRef] | [{{SERVER}}/publications/Finkelstaedt-2013-AnnApplStat-MS.pdf PDF-ms]

* Liepe J, Filippi S, Komorowski M, Stumpf MPH. '''Maximizing the information content of experiments in systems biology''', ''PLOS Comput Biol'' 9(1):e1002888 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23382663 PubMed] [http://dx.doi.org/10.1371/journal.pcbi.1002888 CrossRef] | [{{SERVER}}/publications/Liepe-2013-PLOSComputBiol.pdf PDF]

* Komorowski M, Miękisz J, Stumpf MPH. '''Decomposing noise in biochemical signalling systems highlights the role of protein degradation''', ''Biophys J'' 104(8):1783-1798 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23601325 PubMed] [http://dx.doi.org/doi:10.1016/j.bpj.2013.02.027 CrossRef] | [{{SERVER}}/publications/Komorowski-2013-BiophysJ.pdf PDF]

* Woodcock DJ, Vance KW, Komorowski M, Koentges G, Finkenstädt B, Rand DA. '''A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number''', ''Bioinformatics'' 29(12):1519-1525 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23677939 PubMed] [http://dx.doi.org/10.1093/bioinformatics/btt201 CrossRef] | [{{SERVER}}/publications/Woodcock-2013-Bioinformatics.pdf PDF]

* Schumacher J, Behrends V, Pan Z, Brown DR, Heydenreich F, Lewis MR, Bennett MH, Razzaghi B, Komorowski M, Barahona M, Stumpf MPH, Wigneshweraraj S, Bundy JG, Buck M. '''Nitrogen and carbon status are integrated at the transcriptional level by the nitrogen regulator NtrC in vivo''', ''mBio'' 4(6):e00881-13 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/24255125 PubMed] [http://dx.doi.org/10.1128/mBio.00881-13 CrossRef] | [{{SERVER}}/publications/Schumacher-2013-mBio.pdf PDF]

* Paprocki B, Szczepanski J. '''Transmission efficiency in ring, brain inspired neuronal networks. Information and energetic aspects''', ''Brain Res'' 1536:135–143 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23891793 PubMed] [http://dx.doi.org/10.1016/j.brainres.2013.07.024 CrossRef]

* Paprocki B, Szczepanski J, Kolbuk D. '''Information transmission efficiency in neuronal communication systems''', ''BMC Neuroscience'' (2013) 14(Suppl 1):P217 [http://dx.doi.org/10.1186/1471-2202-14-S1-P217 CrossRef] | [http://www.biomedcentral.com/content/pdf/1471-2202-14-S1-P217.pdf PDF]

* Paprocki B, Szczepanski J. '''How do the amplitude fluctuations affect the neuronal transmission efficiency''', ''Neurocomputing'' 104:50-56 (2013; e-pub 2012) [http://dx.doi.org/10.1016/j.neucom.2012.11.001 CrossRef]

* Arnold MM, Szczepanski J, Montejo N, Amigo JM, Wajnryb E, Sanchez-Vives MV. '''Information content in cortical spike trains during brain state transitions''', ''J Sleep Res'' 22(1):13-21 (2013, e-pub 2012) [http://www.ncbi.nlm.nih.gov/pubmed/22737985 PubMed] [http://dx.doi.org/10.1111/j.1365-2869.2012.01031.x CrossRef]

* Chmielowiec A. '''Parallel Algorithm for Multiplying Integer Polynomials and Integers''', ''Lecture Notes in Electrical Engineering'' 229:605-616 (2013) [http://dx.doi.org/10.1007/978-94-007-6190-2_46 CrossRef]

* Guzowski J, Jakiela S, Korczyk PM, Garstecki P. '''Custom tailoring multiple droplets one-by-one''', ''Lab Chip'' 13:4308–4311 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/24064861 PubMed] [http://dx.doi.org/10.1039/C3LC50841B CrossRef]

* Korczyk PM, Derzsi L, Jakiela S, Garstecki P. '''Microfluidic traps for hard-wired operations on droplets''', ''Lab Chip'' 13:4096-4102 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23970204 PubMed] [http://dx.doi.org/10.1039/C3LC50347J CrossRef]

* Churski K, Nowacki M, Korczyk PM, Garstecki P. '''Simple modular systems for generation of droplets on demand''', ''Lab Chip'' 13:3689-3697 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23868204 PubMed] [http://dx.doi.org/10.1039/C3LC50340B CrossRef]

* van Steijn V, Korczyk PM, Derzsi L, Abate AR, Weitz DA , Garstecki P. '''Block-and-break generation of microdroplets with fixed volume''', '' Biomicrofluidics'' 7(2):024108 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/24404013 PubMed] [http://dx.doi.org/10.1063/1.4801637 CrossRef]

* Węgrzyn J, Samborski A, Reissig L, Korczyk PM, Błoński S, Garstecki P. '''Microfluidic architectures for efficient generation of chemistry gradations in droplets''', ''Microfluid Nanofluid'' 14(1-2):235–245 (2013, e-pub 2012) [http://dx.doi.org/10.1007/s10404-012-1042-3 CrossRef] | [{{SERVER}}/publications/Wegrzyn-2013-MicrofluidNanofluid.pdf PDF]

* Andrychowski J, Frontczak-Baniewicz M, Sulejczak D, Kowalczyk T, Chmielewski T, Czernicki Z, Kowalewski TA. '''Nanofiber nets in prevention of cicatrisation in spinal procedures. Experimental study''', ''Folia Neuropathol'' 51(2):147-57 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23821387 PubMed] [http://dx.doi.org/10.5114/fn.2013.35958 CrossRef]

* Kloskowski T, Kowalczyk T, Nowacki M, Drewa T. '''Tissue engineering and ureter regeneration, is it possible?''' ''Int J Artif Organs'' 36(6):392-405 (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23645581 PubMed] [http://dx.doi.org/10.5301/ijao.5000130 CrossRef]

===2012===

* Zuk PJ, Kochańczyk M, Jaruszewicz J, Bednorz W, Lipniacki T. '''Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process''', ''Phys Biol'' 9(5):055002 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/23011381 PubMed] [http://dx.doi.org/10.1088/1478-3975/9/5/055002 CrossRef] | [{{SERVER}}/publications/Zuk-2012-PhysBiol-MS.pdf PDF-ms]

* Kocieniewski P, Faeder JR, Lipniacki T. '''The interplay of double phosphorylation and scaffolding in MAPK pathways''', ''J Theor Biol'' 295:116-124 (2012; e-pub 2011) [http://www.ncbi.nlm.nih.gov/pubmed/22123371 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2011.11.014 CrossRef] | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3417091/pdf/nihms341500.pdf PDF-ms]

* Barua D, Hlavacek WS, Lipniacki T. '''A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn''', ''J Immunol'' 189(2):646-658 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22711887 PubMed] [http://dx.doi.org/10.4049/jimmunol.1102003 CrossRef] | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392547/pdf/nihms-378694.pdf PDF-ms]

* El Khatib N, Genieys S, Kazmierczak B, Volpert V. '''Reaction-diffusion model of artherosclerosis development''', ''J Math Biol'' 65(2):349-374 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/21858687 PubMed] [http://dx.doi.org/10.1007/s00285-011-0461-1 CrossRef]

* Gejji R, Kaźmierczak B, Alber M. '''Classification and stability of global inhomogeneous solutions of a macroscopic model of cell motion''', ''Math Biosci'' 238(1):21-31 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22504124 PubMed] [http://dx.doi.org/10.1016/j.mbs.2012.03.009 CrossRef]

* Dyzma M, Szopa P, Kaźmierczak B. '''Membrane associated complexes: new approach to calcium dynamics modeling''', ''Math Model Nat Phenom'' 7(2):32-50 (2012) [http://dx.doi.org/10.1051/mmnp/20127608 CrossRef]

* Piechór K. '''Reaction-diffusion equation modelling calcium waves with fast buffering in visco-elastic environment''', ''Arch Mech'' 64(5):477-509 (2012) [{{SERVER}}/publications/Piechor-2012-ArchMech.pdf PDF]

* Korczyk PM, Kowalewski TA, Malinowski SP. '''Turbulent mixing of clouds with the environment: Small scale two phase evaporating flow investigated in a laboratory by particle image velocimetry''', ''Physica D'' 241:288-296 (2012) [http://dx.doi.org/10.1016/j.physd.2011.11.003 CrossRef]

* Guzowski J, Korczyk PM, Jakiela S, Garstecki P. '''The structure and stability of multiple micro-droplets''', ''Soft Matter'' 8:7269-7278 (2011) [http://dx.doi.org/10.1039/C2SM25838B CrossRef]

* Jakiela S, Korczyk PM, Makulska S, Cybulski O, Garstecki P. '''Discontinuous transition in a laminar fluid flow: A change of flow topolgy inside a droplet moving in a micron-size channel''', ''Phys Rev Lett'' 108(13):134501 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22540703 PubMed] [http://dx.doi.org/10.1103/PhysRevLett.108.134501 CrossRef]

* Sikora M, Adam D, Korczyk PM, Prodi-Schwab A, Szymczak P, Cieplak M. '''Geometrical and electrical properties of indium tin oxide clusters in ink dispersions''', ''Langmuir'' 28(2):1523-1530 (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22136161 PubMed] [http://dx.doi.org/10.1021/la203886b CrossRef]

* Baranowska-Korczyc A, Reszka A, Sobczak K, Sikora B, Dziawa P, Aleszkiewicz M, Kłopotowski Ł, Paszkowicz W, Dłużewski P, Kowalski BJ, Kowalewski TA, Sawicki M, Elbaum D, Fronc K, '''Magnetic Fe doped ZnO nanofibers obtained by electrospinning''', ''J Sol-Gel Sci Techn'' 61(3):494-500 (2012) [http://dx.doi.org/10.1007/s10971-011-2650-1 CrossRef]

* Jarecki L, Błoński S, Blim A, Zachara A. '''Modeling of Pneumatic Melt Spinning Processes''', ''J Appl Polym Sci'' 125(6):4402–4415 (2012) [http://dx.doi.org/10.1002/app.36575 CrossRef]

* Kołbuk D, Sajkiewicz P, Kowalewski TA, '''Optical birefringence and molecular orientation of electrospun polycaprolactone fibers by polarizing-interference microscopy''', ''Eur Polym J'' 48:275-283 (2012) [http://dx.doi.org/10.1016/j.eurpolymj.2011.11.012 CrossRef]

* Blim A, Kowalczyk T. '''Dynamic lattice liquid (DLL) model in computer simulation of the structure and dynamics of polymer condensed systems''', ''e-Polymers'' 079:1-11 (2012) [{{SERVER}}/publications/Blim-2012-ePolymers.pdf PDF]

===2011===

* Hat B, Kaźmierczak B, Lipniacki T. '''B cell activation triggered by the formation of the small receptor cluster: A computational study''', ''PLoS Comput Biol'' 7(10):e1000448 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21998572 PubMed] [http://dx.doi.org/10.1371/journal.pcbi.1002197 CrossRef] | [{{SERVER}}/publications/Hat-2011-PLoSComputBiol.pdf PDF]

* Szopa P, Lipniacki T, Kaźmierczak B. '''Exact solutions to a spatially extended model of kinase-receptor interaction''', ''Phys Biol'' 8(5):055005 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21832804 PubMed] [http://dx.doi.org/10.1088/1478-3975/8/5/055005 CrossRef]

* Kaźmierczak B, Peradzyński Z. '''Calcium waves with fast buffers and mechanical effects''', ''J Math Biol'' 62:1-38 (2011, e-pub 2010) [http://www.ncbi.nlm.nih.gov/pubmed/20098991 PubMed] [http://dx.doi.org/10.1007/s00285-009-0323-2 CrossRef]

* Kaźmierczak B, Piechór K. '''Traveling wave solutions of a model of skin pattern formation in a singular case''', ''Math Method Appl Sci'' 34(3):325–337 (2011; e-pub 2010) [http://dx.doi.org/10.1002/mma.1359 CrossRef]

* Kochańczyk M. '''Prediction of functionally important residues in globular proteins from unusual central distances of amino acids''', ''BMC Struct Biol'' 11(1):34 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21923943 PubMed] [http://dx.doi.org/10.1186/1472-6807-11-34 CrossRef] | [http://www.biomedcentral.com/content/pdf/1472-6807-11-34.pdf PDF] [{{SERVER}}/publications/Kochanczyk-2011-BMCStructBiol.pdf PDF+supp] [{{SERVER}}/publications/supplementary/Kochanczyk-2011-BMCStructBiol-SourceCode.tar.gz Code] [{{SERVER}}/services/surpresi/ Server]

* Guzowski J, Korczyk PM, Jakiela S, Garstecki P. '''Automated high-throughtput generation of droplets''', ''Lab Chip'' 11:3593–3595 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21927762 PubMed] [http://dx.doi.org/10.1039/C1LC20595A CrossRef]

* Jakiela S, Makulska S, Korczyk PM, Garstecki P. '''Speed of flow of individual droplets in microfluidic channels as a function of the capillary number, volume of droplets and contrast of viscosities''', ''Lab Chip'' 11(21):3603–3608 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21909516 PubMed] [http://dx.doi.org/10.1039/C1LC20534J CrossRef]

* Sielamowicz I, Czech M, Kowalewski TA. '''Empirical analysis of eccentric flow registered by the DPIV technique inside a silo model''', ''Powder Technol'' 212:38–56 (2011) [http://dx.doi.org/10.1016/j.powtec.2011.04.022 CrossRef]

* Sielamowicz I, Czech M, Kowalewski TA. '''Empirical description of granular flow inside a model silo with vertical walls''', ''Biosyst Eng'' 108(4):334–344 (2011) [http://dx.doi.org/10.1016/j.biosystemseng.2011.01.004 CrossRef]

* Szczepański J, Arnold M, Wajnryb E, Amigó JM, Sanchez-Vives MV. '''Mutual information and redundancy in spontaneous communication between cortical neurons''', ''Biol Cybern'' 104:161–174 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21340601 PubMed] [http://dx.doi.org/10.1007/s00422-011-0425-y CrossRef]

* Paprocki B, Szczepański J. '''Efficiency of neural transmission as a function of synaptic noise, threshold, and source characteristics''', ''Biosystems'' 105(1):62–72 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21439348 PubMed] [http://dx.doi.org/10.1016/j.biosystems.2011.03.005 CrossRef]

* Kursa M, Bajer K, Lipniacki T. '''Cascade of vortex loops initiated by a single reconnection of quantum vortices''', ''Phys Rev B'' 83(1):014515 (2011) [http://dx.doi.org/10.1103/PhysRevB.83.014515 CrossRef] | [{{SERVER}}/publications/Kursa-2011-PhysRevB-MS.pdf PDF-ms]

* Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. '''Guidelines for visualizing and annotating rule-based models''', ''Mol Biosyst'' 7(10):2779-95 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21647530 PubMed] [http://dx.doi.org/10.1039/c1mb05077J CrossRef] | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3168731/pdf/nihms-301574.pdf PDF-ms]

* Błoński S, Domagalski P, Dziubiński M, Kowalewski TA. '''Hydrodynamically modified seeding for micro-PIV''', ''Arch Mech'' 63:163–182 (2011) [{{SERVER}}/publications/Blonski-2011-ArchMech.pdf PDF]

* Jarecki L, Błoński S, Zachara A, Blim A. '''Computer modeling of pneumatic formation of superthin fibres''', ''Comp Meth Mat Sci'' 11(1): 74–80 (2011)

* Szumbarski J, Błoński S. '''Destabilization of laminar flow in a rectangular channel by transversely-oriented wall corrugation''', ''Arch Mech'' 63(4):393–428 (2011) [{{SERVER}}/publications/Szumbarski-2011-ArchMech.pdf PDF]

* Szymborski T, Korczyk PM, Hołyst R, Garstecki P. '''Ionic polarization of liquid-liquid interfaces; dynamic control of the rate of electro-coalescence''', ''Appl Phys Lett'' 99:094101 (2011) [http://dx.doi.org/10.1063/1.3629783 CrossRef]

* Korczyk PM, Cybulski O, Makulska S, Garstecki P. '''Effects of unsteadiness of the rates of flow on the dynamics of formation of droplets in microfluidic systems''', ''Lab Chip'' 11:173–175 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/20949204 PubMed] [http://dx.doi.org/10.1039/C0LC00088D CrossRef]

===2010===

* Tay S, Hughey J, Lee T, Lipniacki T, Covert M, Quake S. '''Single-cell NF-κB dynamics reveal digital activation and analogue information processing''', ''Nature'' 466:267-271 (2010) [http://www.ncbi.nlm.nih.gov/pubmed/20581820 PubMed] [http://dx.doi.org/10.1038/nature09145 CrossRef] | [{{SERVER}}/publications/Tay-2010-Nature.pdf PDF] [{{SERVER}}/publications/supplementary/Tay-2010-Nature-SourceCode.zip Code]

* Kaźmierczak B, Dyzma M. '''Mechanical effects coupled with calcium waves''', ''Arch Mech'' 62:121-133 (2010). [{{SERVER}}/publications/Kazmierczak-2010-ArchMech.pdf PDF]

* Kaźmierczak B, Lipniacki T. '''Spatial gradients in kinase cascade regulation''', ''IET Syst Biol'' 4:348-355 (2010) [http://www.ncbi.nlm.nih.gov/pubmed/21073234 PubMed] [http://dx.doi.org/10.1049/iet-syb.2010.0002 CrossRef] | [{{SERVER}}/publications/Kazmierczak-2010-IETSystBiol-MS.pdf PDF-ms]

* Peradzyński Z. '''Diffusion of calcium in biological tissues and accompanying mechano-chemical effects''', ''Arch Mech'' 62(6):423-440 (2010) [{{SERVER}}/publications/Peradzynski-2010-ArchMech.pdf PDF]

* Sadlej K, Wajnryb E, Ekiel-Jeżewska ML, Lamparska D, Kowalewski TA. '''Dynamics of nanofibres conveyed by low Reynolds number flow in a microchannel''', ''Int J Heat Fluid Fl'' 31:996-1004 (2010) [http://dx.doi.org/10.1016/j.ijheatfluidflow.2010.02.021 CrossRef]

* Sielamowicz I, Czech M, Kowalewski TA. '''Empirical description of flow parameters in eccentric flow inside a silo model''', ''Powder Technol'' 198:381-394 (2010) [http://dx.doi.org/10.1016/j.powtec.2009.12.003 CrossRef]

* Piechór K. '''Forms of travelling waves admitted by a mechanochemical model of tumour angiogenesis''', ''Math Method Appl Sci'' 33:1482-1495 (2010) [http://dx.doi.org/10.1002/mma.1262 CrossRef]

* Churski K, Korczyk P, Garstecki P. '''High-throughput automated droplet microfluidic system for screening of reaction conditions''', ''Lab Chip'' 10:816 (2010) [http://www.ncbi.nlm.nih.gov/pubmed/20300668 PubMed] [http://dx.doi.org/10.1039/B925500A CrossRef]

===2009===

* Szczepański J. '''On the distribution function of the complexity of finite sequences''', ''Inform Sciences'' 179:1217-1220 (2009) [http://dx.doi.org/10.1016/j.ins.2008.12.019 CrossRef]

* Alber M, Gejji R, Kaźmierczak B. '''Existence of global solutions of a macroscopic model of cellular motion in a chemotactic field''', ''Appl Math Lett'' 22:1645-1648 (2009) [http://dx.doi.org/10.1016/j.aml.2009.05.013 CrossRef]

* Hat B, Puszyński K, Lipniacki T. '''Exploring mechanisms of oscillations in p53 and NF-κB systems''', ''IET Syst Biol'' 3(5):342-355 (2009) [http://www.ncbi.nlm.nih.gov/pubmed/21028925 PubMed] [http://dx.doi.org/10.1049/iet-syb.2008.0156 CrossRef] | [{{SERVER}}/publications/Hat-2009-IETSystBiol-MS.pdf PDF-ms]

* Puszyński K, Bertolusso R, Lipniacki T. '''Crosstalk between p53 and NF-κB systems: pro- and anti-apoptotic functions of NF-κB''', ''IET Syst Biol'' 3(5):356-367 (2009) [http://www.ncbi.nlm.nih.gov/pubmed/21028926 PubMed] [http://dx.doi.org/10.1049/iet-syb.2008.0172 CrossRef] | [{{SERVER}}/publications/Puszynski-2009-IETSystBiol-MS.pdf PDF-ms] [{{SERVER}}/publications/supplementary/Puszynski-2009-IETSystBiol-SourceCode.zip Code]

* Kaźmierczak B, Lipniacki T. '''Regulation of kinase activity by diffusion and feedback''', ''J Theor Biol'' 259:291-296 (2009) [http://www.ncbi.nlm.nih.gov/pubmed/19306885 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2009.03.016 CrossRef]

* Alabrudziński S, Ekiel-Jeżewska ML, Chehata-Gomez D, Kowalewski TA. '''Particle clusters settling under gravity in a viscous fluid''', ''Phys Fluids'' 21:073302 (2009) [http://dx.doi.org/10.1063/1.3168615 CrossRef]

* Peradzyński Z, Barral S, Makowski K, Dudeck M. '''Causality violation in analysis of Hall thruster plasma instabilities''', ''J Tech Phys'' 49(3-4):315-327 (2009)

* El Khatib N, Génieys S, Kaźmierczak B, Volpert V. '''Mathematical modelling of atherosclerosis as an inflammatory disease''', ''Phil Trans R Soc A'' 367(1908):4877-4886 (2009) [http://www.ncbi.nlm.nih.gov/pubmed/19884184 PubMed] [http://dx.doi.org/10.1098/rsta.2009.0142 CrossRef]

* Fryczkowski R, Kowalczyk T. '''Nanofibres from polianiline/polihydroxybutyrate blends''', ''Synthetic Met'' 159:2266-2268 (2009) [http://dx.doi.org/10.1016/j.synthmet.2009.09.008 CrossRef]

* Bretcanu O, Misra SK, Yunos DM, Boccaccini AR, Roy I, Kowalczyk T, Błoński S, Kowalewski TA. '''Electrospun nanofibrous biodegradable polyester coatings on Bioglass-based glass-ceramics for tissue engineering''', ''Mater Chem Phys'' 118:420-426 (2009) [http://dx.doi.org/10.1016/j.matchemphys.2009.08.011 CrossRef]

===2008===

* Kaźmierczak B. '''Existence of global solutions to a model of chondrogenesis''', ''Math Meth Appl Sci'' 32(3):264-283 (2008) [http://dx.doi.org/10.1002/mma.1034 CrossRef]

* Kaźmierczak B, Volpert V. '''Calcium waves in systems with immobile buffers as a limit of waves for systems with non zero diffusion''', ''Nonlinearity'' 21:71 (2008) [http://dx.doi.org/10.1088/0951-7715/21/1/004 CrossRef]

* Kaźmierczak B, Volpert V. '''Travelling calcium waves in systems with non diffusing buffers''', ''Math Mod Meth Appl Sci'' 18(6):883-912 (2008) [http://dx.doi.org/10.1142/S0218202508002899 CrossRef]

* Puszyński K, Hat B, Lipniacki T. '''Oscillations and bistability in the stochastic model of p53''', ''J Theor Biol'' 254(2):452-465 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18577387 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2008.05.039 CrossRef] | [{{SERVER}}/publications/supplementary/Puszynski-2008-JTheorBiol-SourceCode.zip Code]

* Lipniacki T, Hat B, Faeder JR, Hlavacek WS. '''Stochastic effects and bistability in T cell receptor signaling''', ''J Theor Biol'' 254(1):110-122 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18556025 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2008.05.001 CrossRef] | [{{SERVER}}/publications/Lipniacki-2008-JTheorBiol-MS.pdf PDF-ms] [{{SERVER}}/publications/supplementary/Lipniacki-2008-JTheorBiol-ODE.zip Code-ODE] [{{SERVER}}/publications/supplementary/Lipniacki-2008-JTheorBiol-Gillespie.zip Code-Gillespie] [{{SERVER}}/publications/supplementary/Lipniacki-2008-JTheorBiol.bngl Code-BioNetGen]

* Amigó JM, Kocarev L, Szczepański J. '''On some properties of the discrete Lyapunov exponent''', ''Phys Lett A'' 372:6265-6268 (2008) [http://dx.doi.org/10.1016/j.physleta.2008.07.076 CrossRef]

* Nagarajan R, Szczepański J, Wajnryb E. '''Interpreting non-random signatures in biomedical signals using Lempel-Ziv complexity''', ''Physica D'' 237(3):359-364 (2008) [http://dx.doi.org/10.1016/j.physd.2007.09.007 CrossRef]

* Kowalewski TA, Błoński S, Korczyk P. Eksperymentalna analiza przepływów w skali mikro i nano '''[Experimental analysis of micro- and nanoscale flows]''', in Wybrane zagadnienia przepływów i wymiany ciepła, Oficyna Wyd. Polit. Warsz. 6:127-149 (2008)

* Licznar P, Łomotowski J, Błoński S, Ciach GJ. '''Microprocessor Field Impactometer Calibration: Do We Measure Drops Momentum or Their Kinetic Energy?''', ''J Atmos Ocean Tech'' 25:742-753 (2008) [http://dx.doi.org/10.1175/2007JTECHA938.1 CrossRef]

* Kowalczyk T, Nowicka A, Elbaum D, Kowalewski TA. '''Electrospinning of bovine serum albumin. Optimization and the use for production of biosensors''', ''Biomacromolecules'' 9:2087-2090 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18576601 PubMed] [http://dx.doi.org/10.1021/bm800421s CrossRef]

* Piechór K. '''Non-local Korteweg stresses from kinetic theory point of view''', ''Arch Mech'' 60(1):23-58 (2008) [{{SERVER}}/publications/Piechor-2008-ArchMech.pdf PDF]

* Malinowski SP, Andrejczuk M, Grabowski W, Korczyk P, Kowalewski TA, Smolarkiewicz PK. '''Laboratory and modeling studies of cloud–clear air interfacial mixing: anisotropy of small-scale turbulence due to evaporative cooling''', ''New J Phys'' 10:075020 (2008) [http://dx.doi.org/10.1088/1367-2630/10/7/075020 CrossRef]

===2007===

* Błoński S, Korczyk PM, Kowalewski TA. '''Analysis of turbulence in a micro-channel emulsifier''', ''Int J Therm Sci'' 46:1126–1141 (2007) [http://dx.doi.org/10.1016/j.ijthermalsci.2007.01.028 CrossRef]

* Lipniacki T, Puszyński K, Paszek P, Brasier AR, Kimmel M. '''Single TNFα trimers mediating NF-κB activation: Stochastic robustness of NF-κB signaling''', ''BMC Bioinformatics'' 8:376 (2007) [http://www.ncbi.nlm.nih.gov/pubmed/17925009 PubMed] [http://dx.doi.org/10.1186/1471-2105-8-376 CrossRef] | [{{SERVER}}/publications/Lipniacki-2007-BMCBioinformatics.pdf PDF] [{{SERVER}}/publications/supplementary/Lipniacki-2007-BMCBioinformatics-Supp1.pdf PDF-supp1] [{{SERVER}}/publications/supplementary/Lipniacki-2007-BMCBioinformatics-Supp2.pdf PDF-supp2] [{{SERVER}}/publications/supplementary/Lipniacki-2007-BMCBioinformatics-Supp3.pdf PDF-supp3] [{{SERVER}}/publications/supplementary/Lipniacki-2007-BMCBioinformatics-SourceCode.zip Code] [{{SERVER}}/publications/supplementary/Lipniacki-2007-BMCBioinformatics-SourceCodeSupp.zip Code-supp]

* Alber M, Glimm T, Hentschel HG, Kazmierczak B, Zhang YT, Zhu J, Newman SA. '''The morphostatic limit for a model of skeletal pattern formation in the vertebrate limb''', ''Bull Math Biol'' 69:460-483 (2007) [http://www.ncbi.nlm.nih.gov/pubmed/17965922 PubMed] [http://dx.doi.org/10.1007/s11538-007-9264-3 CrossRef]

* Newman SA, Christley S, Glimm T, Hentschel HG, Kazmierczak B, Zhang YT, Zhu J, Alber M. '''Multiscale models for vertebrate limb development''', ''Curr Top Dev Biol'' 81:311-340 (2007) [http://www.ncbi.nlm.nih.gov/pubmed/18023733 PubMed] [http://dx.doi.org/10.1016/S0070-2153(07)81011-8 CrossRef]

* Amigo JM, Kocarev L, Szczepanski J. '''Theory and practice of chaotic cryptography''', ''Phys Lett A'' 366:211-216 (2007) [http://dx.doi.org/10.1016/j.physleta.2007.02.021 CrossRef]

* Lipniacki T, Kimmel M. '''Deterministic and stochastic models of NF-κB pathway''', ''Cardiovasc Toxicol'' 7(4):215-234 (2007) [http://www.ncbi.nlm.nih.gov/pubmed/17943462 PubMed] [http://dx.doi.org/10.1007/s12012-007-9003-x CrossRef]

* Bobrowski A, Lipniacki T, Pichor K, Rudnicki R. '''Asymptotic behavior of distributions of mRNA and protein levels in a model of stochastic gene expression''', ''J Math Anal Appl'' 333:753-769 (2007) [http://dx.doi.org/10.1016/j.jmaa.2006.11.043 CrossRef]

* Hat B, Paszek P, Kimmel M, Piechor K, Lipniacki T. '''How the number of alleles influences gene expression''', ''J Stat Phys'' 128:511-533 (2007) [http://dx.doi.org/10.1007/s10955-006-9218-4 CrossRef]

* Fujarewicz K, Kimmel M, Lipniacki T, Swierniak A. '''Adjoint systems for models of cell signalling pathways and their application to parameter fitting''', ''IEEE/ACM T Comput Biol Bioinform'' 4:322-335 (2007) [http://www.ncbi.nlm.nih.gov/pubmed/17666754 PubMed] [http://doi.ieeecomputersociety.org/10.1109/tcbb.2007.1016 CrossRef]

* Kowalewski TA. '''Thermochromic Liquid Crystals''', in ''Springer Handbook of Experimental Fluid Mechanics'', chap. B 7.1, 487-499 (2007)

* Amigo JM, Kocarev L, Szczepanski J, '''Discrete Lyapunov exponent and resistance to differential cryptanalysis''', ''IEEE T Circuits II'' 54:882-886 (2007) [http://dx.doi.org/10.1109/TCSII.2007.901576 CrossRef]

* Kazmierczak B, Volpert V. '''Travelling waves in partially degenerated reaction-diffusion systems''', ''Mathematical Modelling of Natural Phenomena'' 2:106-125 (2007) [http://dx.doi.org/10.1051/mmnp:2008021 CrossRef]

* Kazmierczak B, Volpert V. '''Calcium waves in systems with immobile buffers as a limit of waves for systems with nonzero diffusion''', ''Nonlinearity'' 21:71-98 (2007) [http://dx.doi.org/10.1088/0951-7715/21/1/004 CrossRef]

* Błoński S, Kowalewski TA. '''PIV analysis of turbulent flow in a micro-channel''', ''J Theor Appl Mech'' 45:489-503 (2007) [{{SERVER}}/publications/Blonski-2007-JTheorApplMech.pdf PDF]

===2006===

* Lipniacki T, Paszek P, Brasier AR, Luxon B, Kimmel M. '''Stochastic regulation in early immune response''', ''Biophys J'' 90:725-742 (2006) [http://www.ncbi.nlm.nih.gov/pubmed/16284261 PubMed] [http://dx.doi.org/10.1529/biophysj.104.056754 CrossRef] | [{{SERVER}}/publications/Lipniacki-2006-BiophysJ.pdf PDF] [{{SERVER}}/publications/supplementary/Lipniacki-2006-BiophysJ-SourceCode.zip Code]

* Lipniacki T, Paszek P, Marciniak-Czochra A, Brasier AR, Kimmel M. '''Transcriptional stochasticity in gene expression''', ''J Theor Biol'' 238:348-367 (2006) [http://www.ncbi.nlm.nih.gov/pubmed/16039671 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2005.05.032 CrossRef]

* Lipniacki T. '''Dynamics of superfluid 4He: Two-scale approach''', ''Eur J Mech B-Fluid'' 25(4):435-458 (2006) [http://dx.doi.org/10.1016/j.euromechflu.2006.04.004 CrossRef]

* Kocarev L, Szczepanski J, Amigo JM, Tomovski I. '''Discrete Chaos-I: Theory''', ''IEEE T Circuits Sys'' 53:1300-1309 (2006) [http://dx.doi.org/10.1109/TCSI.2006.874181 CrossRef]

* Amigo JM, Kocarev L, Szczepanski J. '''Order patterns and chaos''', ''Phys Lett A'' 355:27-31 (2006) [http://dx.doi.org/10.1016/j.physleta.2006.01.093 CrossRef] |

* Korczyk P, Malinowski SP, Kowalewski TA. '''Mixing of cloud and clear air in centimeter scales observed in laboratory by means of Particle Image Velocimetry''', ''Atmospheric Res'' 82:173-182 (2006) [http://dx.doi.org/10.1016/j.atmosres.2005.09.009 CrossRef]

* Sielamowicz I, Błoński S, Kowalewski TA '''Digital Particle Image Velocimetry (DPIV) technique in measurements of granular material flows, Part 2 of 3 - converging hoppers''', ''Chem Eng Sci'' 61(16):5307-5317(2006) [http://dx.doi.org/10.1016/j.ces.2006.03.002 CrossRef]

===2005===

* Paszek P, Lipniacki T, Brasier AR, Tian B, Nowak DE, Kimmel M. '''Stochastic effects of multiple regulators on expression profiles in eukaryotes''', ''J Theor Biol'' 233:423-433 (2005) [http://www.ncbi.nlm.nih.gov/pubmed/15652150 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2004.10.023 CrossRef]

* Chaturvedi R, Huang C, Schneider T, Izaguirre J, Glimm T, Hentschel G, Glazier J, Kazmierczak B, Newman S, Alber M. '''On multiscale approaches to three-dimensional modeling of morphogenesis''', ''J R Soc Interface'' 2:237-253 (2005) [http://www.ncbi.nlm.nih.gov/pubmed/16849182 PubMed] [http://dx.doi.org/10.1098/rsif.2005.0033 CrossRef] | [{{SERVER}}/publications/Chaturvedi-2005-JRSocInterface.pdf PDF]

* Alber M, Hentschel HGE, Kazmierczak B, Newman S. '''Existence of solutions to a new model of biological pattern formation''', ''J Math Anal Appl'' 308:175-194 (2005) [http://dx.doi.org/10.1016/j.jmaa.2004.11.026 CrossRef]

* Alber M, Glimm T, Hentschel HGE, Kazmierczak B, Newman S. '''Stability of ''n''-dimensional patterns in a generalized Turing system: implications for a biological patterns formation''', ''Nonlinearity'' 18:125 (2005) [http://dx.doi.org/10.1088/0951-7715/18/1/007 CrossRef]

* Belk M, Kazmierczak B, Volpert V. '''Existence of reaction-diffusion-convection waves in unbounded strips''', ''Int J Math Math Sci'' 2005(2):169-193 (2005) [http://dx.doi.org/10.1155/IJMMS.2005.169 CrossRef]

* Kazmierczak B. Fale biegnące w ośrodkach z dyfuzją, ''Pismo PTM - Matematyka Stosowana. Matematyka dla Społeczeństwa 6'', 47:29-47 (2005)

* Szczepanski J, Amigo JM, Michalek T, Kocarev L. '''Cryptographically Secure Substitutions Based on the Approximation of Mixing Maps''', ''IEEE T Circuits Sys'' 52:443-453 (2005) [http://dx.doi.org/10.1109/TCSI.2004.841602 CrossRef]

* Amigó JM, Szczepanski J, Kocarev L. '''A Chaos-based approach to the design of cryptographically secure substitutions''', ''Phys Lett A'' 343:55-60 (2005) [http://dx.doi.org/10.1016/j.physleta.2005.05.057 CrossRef]

* Peradzyński Z, Kazmierczak B. '''On mechanochemical calcium waves''', ''Arch Appl Mech'' 74:827-833 (2005) [http://dx.doi.org/10.1007/s00419-005-0392-7 CrossRef]

* Barral S, Makowski K, Peradzyński Z, Dudek M. '''Transit time instability in Hall Thruster''', ''Phys Plasmas'' 12, 073504 (2005) [http://dx.doi.org/10.1063/1.1947796 CrossRef]

* Kowalewski TA, Blonski S, Barral S. '''Experiments and modelling of electrospinning process''', ''B Pol Acad Sci-Tech'' 53:385-394 (2005) [{{SERVER}}/publications/Kowalewski-2005-BPolAcadSciTech.pdf PDF]

* Sielamowicz I, Błoński S, Kowalewski TA. '''Optical technique DPIV in measurements of granular material flows, Part 1 of 3 - plane hoppers''', ''Chem Eng Sci'' 60(2):589-598 (2005) [http://dx.doi.org/10.1016/j.ces.2004.07.135 CrossRef]

* Michalek T, Kowalewski TA, Saler B. '''Natural convection for anomalous density variation of water - numerical benchmark''', ''Prog In Comput Fluid Dyn'' 5:158-170 (2005) [http://dx.doi.org/10.1504/PCFD.2005.006751 CrossRef]

===2004===

* Kaźmierczak B, Piechór K. '''Some heteroclinic solutions of a model of skin pattern formation''', ''Math Meth Appl Sci'' 27:1317-1345 (2004) [http://dx.doi.org/10.1002/mma.511 CrossRef]

* Szczepański J, Amigó JM, Wajnryb E, Sanchez-Vives MV. '''Characterizing spike trains with Lempel–Ziv complexity''', ''Neurocomputing'' 58-60:79-84 (2004) [http://dx.doi.org/10.1016/j.neucom.2004.01.026 CrossRef]

* Kocarev L, Szczepanski J. '''Finite-Space Lyapunov exponents and pseudochaos''', ''Phys Rev Lett'' 93 (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15601163 PubMed] [http://link.aps.org/doi/10.1103/PhysRevLett.93.234101 CrossRef]

* Szczepanski J, Wajnryb E, Amigó JM, Sanchez-Vives MV, Slater M. '''Biometric random number generators''', ''Comput Secur'' 23:77-84 (2004) [http://dx.doi.org/10.1016/S0167-4048(04)00064-1 CrossRef]

* Amigó JM, Szczepański J, Wajnryb E, Sanchez-Vives MV. '''Estimating the entropy rate of spike trains via Lempel-Ziv complexity''', ''Neural Comput'' 16:717-736 (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15025827 PubMed] [http://dx.doi.org/10.1162/089976604322860677 CrossRef]

* Lipniacki T, Paszek P, Brasier AR, Luxon B, Kimmel M. '''Mathematical model of NF-κB regulatory module''', ''J Theor Biol'' 228:195-215 (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15094015 PubMed] [http://dx.doi.org/10.1016/j.jtbi.2004.01.001 CrossRef]

* Kucaba-Pietal A, Walenta Z, Peradzynski Z. '''Size and wall effects in flows in nanochannels''', ''Turbulence'' 10:77-81 (2004)

* Kazmierczak B, Vakulenko S, Genieys S. '''Pattern formation capacity of spatially extended systems''', ''Phys Rev E'' 69, 016215 (2004) [http://www.ncbi.nlm.nih.gov/pubmed/14995701 PubMed] [http://dx.doi.org/10.1103/PhysRevE.69.016215 CrossRef]

* Kowalewski TA. '''Experimental Methods for Quantitative Analysis of Thermally Driven Flows in Phase Change with Convection''', eds. T. Kowalewski, D. Gobin, ''CISM Course Lecture Notes'' 449:167-215 (2004)

* Kowalewski TA. '''Fluids in Motion''', ''Academia'' 32-34 (2004)

* Kowalewski TA, Pakleza J, Trzcinski R, Zachara A. '''Experimental analysis of vapour bubble growth on heated surface''', ''Archives of Theromdynamics'' 25:1-12 (2004)

* Sielamowicz I, Kowalewski TA, Błoński S. '''Central and Eccentric Granular Material Flows in Bins/Hoppers Registered by Optical Technique DPIV''', ''Acta Agrophysica'' 4(2):519-531 (2004)

===2003===

* Kazmierczak B, Piechór K. '''Some heteroclinic solutions of a model of skin pattern formation''', ''Math Meth Appl Sci'' 27:1317-1345 (2004) [http://dx.doi.org/10.1002/mma.511 CrossRef]

* Kazmierczak B, Volpert V. '''Existence of heteroclinic orbits for systems satysfying monotonicity conditions''', ''Nonlinear Anal-Theor'' 55:467-491 (2003) [http://dx.doi.org/10.1016/S0362-546X(03)00247-5 CrossRef]

* Amigó JM, Szczepański J. '''Approximations of dynamical systems and their applications to cryptography''', ''Int J Bifurcat Chaos'' 13:1937-1948 (2003) [http://dx.doi.org/10.1142/S0218127403007771 CrossRef]

* Szczepanski J, Amigo JM, Wajnryb E, Sanchez-Vives MV. '''Application of Lempel–Ziv complexity to the analysis of neural discharges''', ''Network: Comput Neural Syst'' 14:335-350 (2003) [http://www.ncbi.nlm.nih.gov/pubmed/12790188 PubMed] [http://dx.doi.org/10.1088/0954-898X_14_2_309 CrossRef]

* Amigó JM, Szczepański J, Wajnryb E, Sanchez-Vives MV. '''On the number of states of the neuronal sources''', ''BioSystems'' 68:57-66 (2003) [http://www.ncbi.nlm.nih.gov/pubmed/12543522 PubMed] [http://dx.doi.org/10.1016/S0303-2647(02)00156-9 CrossRef]

* Szczepanski J, Michalek T. '''Random fields approach to the study of DNA chains''', ''J Biol Phys'' 29:39-54 (2003) [http://dx.doi.org/10.1023/A:1022508206826 CrossRef]

* Lipniacki T. '''Shape-preserving solutions for quantum vortex motion under localized induction approximation''', ''Phys Fluids'' 15:1381-1395 (2003) [http://dx.doi.org/10.1063/1.1566756 CrossRef]

* Michalek T, Kowalewski TA. '''Simualtion of the water freezing process - numerical benchmarks''', ''TASK Quarterly'' 7:389-408 (2003)

* Kowalewski TA, Mosyak A, Hetsroni G. '''Tracking of coherent thermal structures on a heated wall. Part 2: DNS Simulation''', ''Exp in Fluids'' 34:390-396 (2003) [http://dx.doi.org/10.1007/s00348-002-0574-9 CrossRef]

* Peradzynski Z, da Silva ML, Lago V, Bedjamin E, Lebehot A, Mazouffre S, Dudeck M, Szymanski Z, Chikaou A, Boubert M. '''Modeling of radiative plasma sorrounding a space probe entering Mars atmosphere''', ''High Temp Mat Pr-Isr'' 7:115-125 (2003)

===2002===

* Kazmierczak B, Lipniacki T. '''Homoclinic solutions in mechanical systems with small dissipation. Application to DNA dynamics''', ''J Math Biol'' 44:309-329 (2002) [http://www.ncbi.nlm.nih.gov/pubmed/11984642 PubMed] [http://dx.doi.org/10.1007/s002850100131 CrossRef]

* Lipniacki T. '''Quasi-static solution for quantum vortex motion under the localized induction approximation''', ''J Fluid Mech'' 477:321-337 (2002) [http://dx.doi.org/10.1017/S0022112002003282 CrossRef]

* Kucaba-Pietal A, Walenta Z, Peradzynski Z. '''What are the limits of applicability of the theory of micropolar fluids for description of real fluid flows through narrow channels''', ''Proc Appl Math Mech'' 1:308-309 (2002) [http://dx.doi.org/10.1002/1617-7061(200203)1:1%3c308::AID-PAMM308%3e3.0.CO;2-B CrossRef]

* Gorska A, Gorski K, Kotulski Z, Paszkiewicz A, Szczepanski J. '''New experimental results in differential-linear cryptanalysis of reduced variants of DES''', ''Int Ser Eng'' 664:335-348 (2002)

* Kazmierczak B. '''Existence of heteroclinic orbits for systems satisfying monotonicity conditions''', ''Lecture Notes in Nonlinear Analysis'', 3:93-107 (2002)

* Kazmierczak B, Piechor K. '''Parametric dependence of phase boundary solution to model kinetic equations on parameters''', ''ZAMP'' 53:539-568 (2002) [http://dx.doi.org/10.1007/s00033-002-8168-1 CrossRef]

* Kazmierczak B, Piechor K. '''Phase boundary solutions to model kinetic equations via the conley index theory, Part II''', ''Math Comput Model'' 36:1393-1408 (2002) [http://dx.doi.org/10.1016/S0895-7177(02)00296-0 CrossRef]

* Kazmierczak B, Massot M, Volpert V, Peradzynski Z. '''Solvability conditions for elliptic problems with non-Fredholm operators''', ''Applicationes Mathematicae'' 29:219-238 (2002)

* Kurzyna J, Gascon N, Bonhomme G, Dudeck M, Makowski K, Peradzynski Z, Lago V, Lebehot A. '''Oscillations of discharge current in stationary plasma thruster''', ''High Temp Mat Pr-Isr'' 6:181-190 (2002)

* Pakleza J, Duluc MC, Kowalewski TA. '''Experimental investigation of vapour bubble growth''', ''Heat Transfer'' 3:479-485 (2002)

* Stasiek J, Kowalewski TA. '''Thermochromic liquid crystals applied for heat transfer research''', ''Opto-electron Rev'' 10:1-10 (2002) [http://dx.doi.org/10.1117/12.472179 CrossRef]

* Monti P, Fernando HJ, Princevac M, Kowalewski TA, Chan WC, Padyjak ER. '''Observations of flow and turbulence in the nocturnal boundary layer over a slope''', ''J Atmospheric Sci'' 59:2513-2534 (2002) [http://dx.doi.org/10.1175/1520-0469(2002)059<2513:OOFATI>2.0.CO;2 CrossRef] |

* Kowalewski TA, Cybulski A, Michalek T. '''Experimental benchmark for casting problems''', ''Heat Transfer'' 4:813-819 (2002)

* Kowalewski TA. '''Particle Image Velocimetry and Thermometry in two phase problems, in Visualization and Imaging in Transport Phenomena''', ''Annals of New York Academy of Sciences'' 972:213-222, edts. S Siedeman & A Landesberg, NY (2002)

===2001===

* Szczepański J. '''A new result on the Nirenberg problem for expanding maps''', ''Nonlinear Anal'' 43:91-99 (2001) [http://dx.doi.org/10.1016/S0362-546X(99)00180-7 CrossRef]

* Szczepanski J, Kotulski Z. '''Pseudorandom Number Generators Based on Chaotic Dynamical Systems''', ''Open Syst Inf Dyn'' 8:137-146 (2001) [http://dx.doi.org/10.1023/A:1011950531970 CrossRef]

* Lipniacki T. '''Evolution of line-length density and anisotropy of quantum tangle in 4He''', ''Phys Rev B'' 64:214516-1-9 (2001) [http://dx.doi.org/10.1103/PhysRevB.64.214516 CrossRef]

* Lipniacki T. '''Thermodynamics of local DNA openings''', ''Phys Rev E'' 64: 051919-1-5 (2001) [http://www.ncbi.nlm.nih.gov/pubmed/11735980 PubMed] [http://dx.doi.org/10.1103/PhysRevE.64.051919 CrossRef]

* Lipniacki T. '''On quantum turbulence in superfluid Helium''', ''Arch Mech'' 53:23-43 (2001)

* Lipniacki T. '''Torsional travelling waves in DNA''', ''J Nonlinear Math Phys'' 8:188-194 (2001) [http://dx.doi.org/10.2991/jnmp.2001.8.s.33 CrossRef] | [{{SERVER}}/publications/Lipniacki-2001-JNonlinearMathPhys.pdf PDF-ms]

* Lipniacki T. '''Statics of rigid units chain''', ''Int J Bifurcat Chaos'' 11:845-854 (2001) [http://dx.doi.org/10.1142/S0218127401002377 CrossRef]

===2000 and older===
* Lipniacki T. '''Evolution of quantum vortices following reconnection''', ''Eur J Mech B-Fluids'', 19:361-378 (2000) [http://dx.doi.org/10.1016/S0997-7546(00)00123-0 CrossRef]

* Lipniacki T. '''Chemically driven traveling waves in DNA''', ''Phys Rev E'' 60:7253-7561 (1999) [http://dx.doi.org/10.1103/PhysRevE.60.7253 CrossRef]

* Kotulski Z, Szczepański J. '''Application of discrete chaotic dynamical systems in cryptography-DCC method''', ''Int J Bifurcat Chaos'' 9:1121-1135 (1999)

* Lipniacki T. '''Dynamics of quantum vortices in superfluid He''', ''Arch Mech'' 50:439-454 (1998)

* Lipniacki T. '''Non-linear mechanical model of DNA dynamics''', ''Nuovo Cimento D'' 20:831-843 (1998) [http://dx.doi.org/10.1007/BF03185484 CrossRef]

* Lipniacki T. '''Can the system of discrete vortices imitate boundary layer,''' ''Arch Mech'' 49:103-109 (1998)

* Szczepański J, Kotulski Z. '''On two motions of a particle driven by equivalent ergodic and chaotic reflection laws''', ''Arch Mech'' 50:865-875 (1998)

* Lipniacki T. '''Dynamics of superfluid Helium - Limits of the Vinen model''', ''Arch Mech'' 49:615-633 (1997)

* Kotulski Z, Szczepański J. '''Discrete chaotic cryptography''', ''Ann Phys'' 6:381-394 (1997) [http://dx.doi.org/10.1002/andp.19975090504 CrossRef]

* Szczepański J, Wajnryb E. '''Do Ergodic or Chaotic Properties of the Reflection Law Imply Ergodicity or Chaotic Behavior of a Particle’s Motion?''' ''Chaos Soliton Fract'' 5:77-89 (1995) [http://dx.doi.org/10.1016/0960-0779(95)91375-8 CrossRef]

* Szczepański J. '''On a problem of Nirenberg concerning expanding maps in Hilbert space''', ''Proc AMS'' 116:1041-1044 (1992) [https://dx.doi.org/10.2307/2159486 CrossRef]

* Szczepański J, E. Wajnryb. '''Long time behavior of the one-particle distribution function for the Knudsen gas for the convex domain''', ''Phys Rev A'' 44:3615-3621 (1991) [http://dx.doi.org/10.1103/PhysRevA.44.3615 CrossRef]

* Szczepański J. '''On the basis of the statistical mechanics. The Liouville equation for systems with an infinite countable number of degrees of freedom''', ''Physica A'' 157:955-982 (1989) [http://dx.doi.org/10.1016/0378-4371(89)90075-7 CrossRef]